John R. Yates III

Molecular Biology · 2001–2015

A researcher in the Science corpus: 35 papers; trusts 27 researchers and is trusted by 45 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 357 citations into it; #854 of 17,773 by trust here, #555 by citations
• Spectroscopy — 191 citations into it; #64 of 1,674 by trust here, #69 by citations
• Food Science — 7 citations into it

Whom John R. Yates III trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Matthias Mann
2. M. Washburn
3. R. Aebersold
4. Shao-En Ong
5. A. Makarov
6. Dirk Wolters
7. B. Domon
8. Joshua E. Elias
9. Jesper V. Olsen
10. Steven P. Gygi

Who trusts John R. Yates III overall

1. B. Aslam
2. M. Larance
3. Wolfram Weckwerth
4. R. Aebersold
5. Alexey I. Nesvizhskii
6. M. Basit
7. David D. Shteynberg
8. Angus I. Lamond
9. Yaoyang Zhang
10. Matthias Mann

Papers from John R. Yates III's perspective

Ordered by how strongly the researchers John R. Yates III trusts endorse each paper. Same corpus, a different order for every researcher.

1. Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* (Molecular & Cellular Proteomics)
2. Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae (Nature Biotechnology)
3. Proteomics to study genes and genomes (Nature)
4. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. (Analytical Chemistry)
5. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. (Analytical Chemistry)
6. Mass spectrometry-based proteomics (Nature)
7. The Need for Guidelines in Publication of Peptide and Protein Identification Data (Molecular & Cellular Proteomics)
8. Genomics, gene expression and DNA arrays (Nature)
9. DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. (Journal of Proteome Research)
10. Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents*S (Molecular & Cellular Proteomics)

Their papers

• Large-scale analysis of the yeast proteome by multidimensional protein identification technology (2001) — 4,480 citations
• A model for random sampling and estimation of relative protein abundance in shotgun proteomics. (2004) — 2,523 citations
• Wnt proteins are lipid-modified and can act as stem cell growth factors (2003) — 2,406 citations
• Tackling soil diversity with the assembly of large, complex metagenomes (2014) — 308 citations
• The minimum information about a proteomics experiment (MIAPE) (2007) — 747 citations
• Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. (2005) — 1,386 citations
• Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii (2002) — 726 citations
• A role for the P-body component GW182 in microRNA function (2005) — 752 citations
• Probability-based validation of protein identifications using a modified SEQUEST algorithm. (2002) — 353 citations
• Mass spectrometry in high-throughput proteomics: ready for the big time (2010) — 472 citations
• A method for the comprehensive proteomic analysis of membrane proteins (2003) — 632 citations
• Proteomics by mass spectrometry: approaches, advances, and applications. (2009) — 1,060 citations
• Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra (2004) — 750 citations
• Acetylation by Tip60 Is Required for Selective Histone Variant Exchange at DNA Lesions (2004) — 719 citations
• MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. (2004) — 341 citations
• A Comprehensive Survey of the Plasmodium Life Cycle by Genomic, Transcriptomic, and Proteomic Analyses (2005) — 837 citations
• Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae (2003) — 362 citations
• Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book (2004) — 410 citations
• A quantitative analysis software tool for mass spectrometry–based proteomics (2008) — 389 citations
• Role of Rpn11 Metalloprotease in Deubiquitination and Degradation by the 26S Proteasome (2002) — 1,087 citations