The minimum information about a proteomics experiment (MIAPE)

By Chris F. Taylor, N. Paton, K. Lilley, P. Binz, R. Julian, Andrew R. Jones, Weimin Zhu, Rolf Apweiler, R. Aebersold, Eric W. Deutsch and 19 more. Nature Biotechnology, 2007

747 citations recorded by the source corpus.

Subfields: Molecular Biology, Spectroscopy

View Paper: https://www.semanticscholar.org/paper/f5a910c219adbb9c955dc1e9af64f9906dd181f5

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Citations in the corpus

Reporting Guidelines to Increase the Reproducibility and Comparability of Research on Microplastics (2020, positive): “Other fields, like molecular biology, 34 proteomics, 35 and transcriptomics, 36 already have highly successful examples of reporting guidelines that have been widely adopted by their field, and we hope this work serves a similar purpose in our field.”
Probing Native Protein Structures by Chemical Cross-linking, Mass Spectrometry, and Bioinformatics (2010, background): “In view of the issues raised above, more detailed descriptions of the data analysis procedure, standardized reporting formats similar to the minimum information about a proteomics experiment (45) concept, and public release of the relevant raw data would be highly beneficial.”
Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources (2020, background): “Data standards include Minimum Information About a Microarray Experiment (MIAME) [25], the National Center for Biotechnology Information (NCBI)’s Minimum Information About a Next-generation Sequencing Experiment (MINSEQE), Metabolomics Standards Initiative (MSI) [26,27], and Minimum Information Abou”
The UniProtKB guide to the human proteome (2016, methodology): “We first confirm that the publications are compliant with the MIAPE (Minimum Information About a Proteomics Experiment) standard for reporting proteomics experiments, providing access to the raw data and the associated metadata (27).”
mzML—a Community Standard for Mass Spectrometry Data (2010, methodology): “Furthermore, because the mzML format is designed to support full MIAPE (10, 23) compliance, automated semantic analyses can be carried out a priori by any consumer of an mzML data file to ascertain the presence of the required minimal information.”
State of the nation in data integration for bioinformatics (2008, background): “Workflow approaches have become extremely popular [11].”
The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. (2009, methodology): “MIQE (Minimum Information for Publication of Quantitative Real-Time PCR Experiments, pronounced mykee) is modeled on similar guidelines drawn up for DNA microarray analysis (16), proteomics experiments ( 17 ), genome sequence specification (18), and those under discussion for RNA interference work (”
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project (2008, background): “Similarly, minimum information guidelines for reporting proteomics experiments and describing systems biology models are gaining broader support in their respective database communitie”