Ido Amit

Molecular Biology · 2009–2022

A researcher in the Science corpus: 29 papers; trusts 1 researcher and is trusted by 2 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 402 citations into it; #13,876 of 17,773 by trust here, #294 by citations

Whom Ido Amit trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Cole Trapnell

Who trusts Ido Amit overall

1. Igor Ulitsky
2. Johannes Rinn
3. M. Guttman

Papers from Ido Amit's perspective

Ordered by how strongly the researchers Ido Amit trusts endorse each paper. Same corpus, a different order for every researcher.

1. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
2. Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)
3. Tissue-Resident Macrophage Enhancer Landscapes Are Shaped by the Local Microenvironment (Cell)
4. BLAT--the BLAST-like alignment tool. (Genome Research)
5. Data-driven phenotypic dissection of AML reveals progenitor-like cells that correlate with prognosis
6. Full-Length mRNA-Seq from single cell levels of RNA and individual circulating tumor cells (Nature Biotechnology)
7. Large-Scale Transcriptional Activity in Chromosomes 21 and 22 (Science)
8. Transcription factors in myeloid development: balancing differentiation with transformation (Nature reviews. Immunology)
9. Computational and analytical challenges in single-cell transcriptomics (Nature reviews genetics)
10. Identification of Flt3+ lympho-myeloid stem cells lacking erythro-megakaryocytic potential a revised road map for adult blood lineage commitment. (Cell)

Their papers

• Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals (2009) — 4,137 citations
• Massively parallel single cell RNA-Seq for marker-free decomposition of tissues into cell types (2014) — 1,700 citations
• Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors. (2015) — 849 citations
• Comprehensive mapping of long range interactions reveals folding principles of the human genome (2009) — 8,189 citations
• A large intergenic non-coding RNA induced by p53 mediates global gene repression in the p53 response (2010) — 2,069 citations
• Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq. (2016) — 698 citations
• Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data (2011) — 17,679 citations
• Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells (2011) — 591 citations
• Chromatin state dynamics during blood formation (2014) — 711 citations
• Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19 (2020) — 2,345 citations
• m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation (2015) — 1,464 citations
• Host microbiota constantly control maturation and function of microglia in the CNS (2015) — 3,034 citations
• Derivation of novel human ground state naive pluripotent stem cells (2013) — 1,038 citations
• Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses (2017) — 1,065 citations
• Co-ChIP enables genome-wide mapping of histone mark co-occurrence at single-molecule resolution (2016) — 89 citations
• Microbiota-modulated metabolites shape the intestinal microenvironment by regulating NLRP6 inflammasome signaling (2015) — 859 citations
• Single-cell spatial reconstruction reveals global division of labor in the mammalian liver (2017) — 885 citations
• Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations. (2016) — 745 citations
• Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19 (2020) — 747 citations
• Microglia states and nomenclature: A field at its crossroads (2022) — 1,518 citations