Co-ChIP enables genome-wide mapping of histone mark co-occurrence at single-molecule resolution

By A. Weiner, D. Lara-Astiaso, V. Krupalnik, O. Gafni, Eyal David, D. Winter, J. Hanna, Ido Amit. 2016

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Iterative random forests to discover predictive and stable high-order interactions (2017, background): “This observation generates interesting questions: What proteins, if any, mediate these dependencies? What is the role of Phospho-S2 Pol II in the interaction? Proteomics on ChIP samples may help reveal the complete set of factors involved in these processes, and new assays such as Co-ChIP may enable”
Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin (2020, background): “Primed chromatin states can be altered or reversed (Bernstein et al., 2006; Lara-Astiaso et al., 2014; Ostuni et al., 2013; Weiner et al., 2016).”