Adrian M. Altenhoff
Molecular Biology · 2009–2020
A researcher in the Science corpus: 12 papers; trusts 19 researchers and is trusted by 10 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 224 citations into it; #4,435 of 17,773 by trust here, #4,105 by citations
- Genetics — 68 citations into it; #2,498 of 6,854 by trust here, #3,155 by citations
- Computational Biology & Bioinformatics — 23 citations into it
- Ecology — 21 citations into it
- Paleontology — 12 citations into it
- Materials Chemistry — 7 citations into it
Whom Adrian M. Altenhoff trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Christophe Dessimoz
- Amos Bairoch
- Robert C. Edgar
- Dekang Lin
- Li Li
- Temple F. Smith
- Alexandros Stamatakis
- Christian J. Stoeckert Jr.
- Maido Remm
- Eugene V. Koonin
Who trusts Adrian M. Altenhoff overall
- Natasha M. Glover
- Christophe Dessimoz
- David M. Emms
- Kalliopi Trachana
- David Moi
- Kristoffer Forslund
- Tunca Dogan
- Clément-Marie Train
- Jaime Huerta-Cepas
- Sean Powell
Papers from Adrian M. Altenhoff's perspective
Ordered by how strongly the researchers Adrian M. Altenhoff trusts endorse each paper. Same corpus, a different order for every researcher.
- A genomic perspective on protein families.
- Distinguishing homologous from analogous proteins.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- OrthoMCL: identification of ortholog groups for eukaryotic genomes. (Genome Research)
- eggNOG v4.0: nested orthology inference across 3686 organisms (Nucleic Acids Res.)
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- The COG database: an updated version includes eukaryotes
- Basic local alignment search tool.
- OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs (Nucleic Acids Res.)
- Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. (Journal of Molecular Biology)
Their papers
- Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods (2009) — 420 citations
- The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements (2014) — 216 citations
- The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces (2017) — 215 citations
- Standardised Benchmarking in the Quest for Orthologs (2016) — 213 citations
- OMA 2011: orthology inference among 1000 complete genomes (2010) — 228 citations
- Gearing up to handle the mosaic nature of life in the quest for orthologs (2017) — 36 citations
- OMA standalone: orthology inference among public and custom genomes and transcriptomes (2018) — 155 citations
- iHam and pyHam: visualizing and processing hierarchical orthologous groups (2018) — 31 citations
- The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019) — 434 citations
- OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more (2020) — 193 citations
- How to build phylogenetic species trees with OMA (2020) — 13 citations
- The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases (2015) — 60 citations