Christophe Dessimoz
Molecular Biology · 2005–2020
A researcher in the Science corpus: 30 papers; trusts 78 researchers and is trusted by 21 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 399 citations into it; #1,982 of 17,773 by trust here, #2,032 by citations
- Genetics — 152 citations into it; #2,144 of 6,854 by trust here, #1,999 by citations
- Plant Science — 62 citations into it
- Artificial Intelligence — 51 citations into it; #23,830 of 35,345 by trust here, #14,438 by citations
- Computational Biology & Bioinformatics — 43 citations into it
- Ecology — 30 citations into it
- Statistics and Probability — 25 citations into it
- Paleontology — 20 citations into it; #477 of 1,427 by trust here, #1,012 by citations
Whom Christophe Dessimoz trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Amos Bairoch
- Stéphane Guindon
- Temple F. Smith
- Adrian M. Altenhoff
- Robert C. Edgar
- Gerard Talavera
- Alexandros Stamatakis
- Stephen F. Altschul
- Dekang Lin
- Jonathan Pevsner
Who trusts Christophe Dessimoz overall
- Adrian M. Altenhoff
- Ari Löytynoja
- Nick Goldman
- Natasha M. Glover
- Kazutaka Katoh
- Albert J. Vilella
- Adrian Schneider
- Kalliopi Trachana
- Benjamin P. Blackburne
- Fangluan Gao
Papers from Christophe Dessimoz's perspective
Ordered by how strongly the researchers Christophe Dessimoz trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- A genomic perspective on protein families.
- Distinguishing homologous from analogous proteins.
- The Pfam protein families database
- A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. (Systematic Biology)
- The COG database: an updated version includes eukaryotes
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- eggNOG v4.0: nested orthology inference across 3686 organisms (Nucleic Acids Res.)
- OrthoMCL: identification of ortholog groups for eukaryotic genomes. (Genome Research)
Their papers
- Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods (2009) — 420 citations
- The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements (2014) — 216 citations
- The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces (2017) — 215 citations
- Phylogenetic assessment of alignments reveals neglected tree signal in gaps (2010) — 138 citations
- Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast (2017) — 674 citations
- Standardised Benchmarking in the Quest for Orthologs (2016) — 213 citations
- OMA 2011: orthology inference among 1000 complete genomes (2010) — 228 citations
- Gearing up to handle the mosaic nature of life in the quest for orthologs (2017) — 36 citations
- GOATOOLS: A Python library for Gene Ontology analyses (2018) — 1,056 citations
- OMA standalone: orthology inference among public and custom genomes and transcriptomes (2018) — 155 citations
- iHam and pyHam: visualizing and processing hierarchical orthologous groups (2018) — 31 citations
- SWPS3 – fast multi-threaded vectorized Smith-Waterman for IBM Cell/B.E. and ×86/SSE2 (2008) — 132 citations
- Advances and Applications in the Quest for Orthologs (2019) — 84 citations
- The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019) — 434 citations
- Structural variant calling: the long and the short of it (2019) — 588 citations
- OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more (2020) — 193 citations
- Homoeologs: What Are They and How Do We Infer Them? (2016) — 179 citations
- OMA, A Comprehensive, Automated Project for the Identification of Orthologs from Complete Genome Data: Introduction and First Achievements (2005) — 81 citations
- Allele-Specific HLA Loss and Immune Escape in Lung Cancer Evolution (2017) — 1,156 citations
- Scalable phylogenetic profiling using MinHash uncovers likely eukaryotic sexual reproduction genes (2019) — 29 citations