Kalliopi Trachana
Molecular Biology · 2011–2014
A researcher in the Science corpus: 3 papers; trusts 4 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 69 citations into it
- Computational Biology & Bioinformatics — 13 citations into it
Whom Kalliopi Trachana trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Eugene V. Koonin
- Sean R. Eddy
- Robert C. Edgar
- Adrian M. Altenhoff
- Feng Chen
- Stephen F. Altschul
- Robert D. Finn
- Ivica Letunic
- Jaime Huerta-Cepas
- Albert J. Vilella
Who trusts Kalliopi Trachana overall
Papers from Kalliopi Trachana's perspective
Ordered by how strongly the researchers Kalliopi Trachana trusts endorse each paper. Same corpus, a different order for every researcher.
- The COG database: an updated version includes eukaryotes
- Basic local alignment search tool.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- A genomic perspective on protein families.
- The Pfam protein families database
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. (Genome Research)
- NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins (Nucleic Acids Res.)
- OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups (Nucleic Acids Res.)
- MUSCLE: multiple sequence alignment with high accuracy and high throughput.
Their papers
- eggNOG v4.0: nested orthology inference across 3686 organisms (2013) — 618 citations
- A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation (2014) — 20 citations
- eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges (2011) — 537 citations