Jaime Huerta-Cepas
Molecular Biology · 2007–2024
A researcher in the Science corpus: 20 papers; trusts 34 researchers and is trusted by 21 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 400 citations into it; #2,119 of 17,773 by trust here, #1,144 by citations
- Genetics — 121 citations into it; #1,874 of 6,854 by trust here, #1,232 by citations
- Ecology — 76 citations into it
- Computational Biology & Bioinformatics — 57 citations into it
- Plant Science — 52 citations into it
- Paleontology — 41 citations into it
- Spectroscopy — 33 citations into it
- Ecological Modeling — 12 citations into it
Whom Jaime Huerta-Cepas trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ivica Letunic
- Eugene V. Koonin
- Toni Gabaldón
- Sean R. Eddy
- Peer Bork
- Ziheng Yang
- Robert C. Edgar
- Temple F. Smith
- Daniel R. Mende
- Joaquín Dopazo
Who trusts Jaime Huerta-Cepas overall
- Damian Szklarczyk
- Ivica Letunic
- Peer Bork
- Kristoffer Forslund
- David M. Emms
- F. Asnicar
- David Moi
- Mohammad Alanjary
- Jerome Kelleher
- Petri Törönen
Papers from Jaime Huerta-Cepas's perspective
Ordered by how strongly the researchers Jaime Huerta-Cepas trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- The Pfam protein families database
- A genomic perspective on protein families.
- The COG database: an updated version includes eukaryotes
- Distinguishing homologous from analogous proteins.
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- Identification of common molecular subsequences.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- Accelerated Profile HMM Searches
- A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. (Systematic Biology)
Their papers
- STRING v10: protein–protein interaction networks, integrated over the tree of life (2014) — 9,777 citations
- eggNOG v4.0: nested orthology inference across 3686 organisms (2013) — 618 citations
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data (2016) — 2,004 citations
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets (2018) — 15,157 citations
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper (2016) — 2,475 citations
- Standardised Benchmarking in the Quest for Orthologs (2016) — 213 citations
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences (2015) — 1,948 citations
- The human phylome (2007) — 208 citations
- PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions (2010) — 154 citations
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses (2018) — 4,095 citations
- ETE: a python Environment for Tree Exploration (2010) — 396 citations
- Gearing up to handle the mosaic nature of life in the quest for orthologs (2017) — 36 citations
- proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes (2016) — 124 citations
- Whole-genome analyses resolve early branches in the tree of life of modern birds (2014) — 1,780 citations
- Genome Sequence of the Pea Aphid Acyrthosiphon pisum (2010) — 1,258 citations
- Advances and Applications in the Quest for Orthologs (2019) — 84 citations
- Structure and function of the global topsoil microbiome (2018) — 2,056 citations
- Discovery of antimicrobial peptides in the global microbiome with machine learning (2024) — 319 citations
- eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale (2021) — 4,097 citations
- Profiling cellular diversity in sponges informs animal cell type and nervous system evolution (2019) — 130 citations