Eric A. Franzosa
Molecular Biology · Nature · 2014–2023
A researcher in the Science corpus: 19 papers; trusts 12 researchers and is trusted by 2 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 566 citations into it; #13,917 of 17,773 by trust here, #1,467 by citations
- Ecology — 96 citations into it; #10,368 of 10,717 by trust here, #1,349 by citations
- Food Science — 86 citations into it
- Computational Biology & Bioinformatics — 46 citations into it
Whom Eric A. Franzosa trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Nicola Segata
- Ian H. Witten
- Heng Li
- Levi Waldron
- T. Bell
- Curtis Huttenhower
- Minoru Kanehisa
- Baris E. Suzek
- Peter J. Turnbaugh
- Yongan Zhao
Who trusts Eric A. Franzosa overall
- Martin Steinegger
- Edoardo Pasolli
- F. Beghini
- Migun Shakya
- Florian P. Breitwieser
- Yong-xin Liu
- Lauren J. McIver
- Aitor Blanco-Míguez
- G. Sharon
- Johannes Söding
Papers from Eric A. Franzosa's perspective
Ordered by how strongly the researchers Eric A. Franzosa trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- UniFrac: a New Phylogenetic Method for Comparing Microbial Communities (Applied and Environmental Microbiology)
- QIIME allows analysis of high-throughput community sequencing data (Nature Methods)
- Microbial ecology: Human gut microbes associated with obesity (Nature)
- Metagenomic microbial community profiling using unique clade-specific marker genes
- Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry (Nature)
- Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation (Proceedings of the National Academy of Sciences of the United States of America)
- ARDB—Antibiotic Resistance Genes Database (Nucleic Acids Res.)
- Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
- Fast gapped-read alignment with Bowtie 2
Their papers
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling (2015) — 1,895 citations
- Strains, functions, and dynamics in the expanded Human Microbiome Project (2017) — 1,132 citations
- Sequencing and beyond: integrating molecular ‘omics for microbial community profiling (2015) — 628 citations
- Species-level functional profiling of metagenomes and metatranscriptomes (2018) — 1,427 citations
- Natural history of the infant gut microbiome and impact of antibiotic treatments on strain-level diversity and stability (2015) — 931 citations
- The Dynamics of the Human Infant Gut Microbiome in Development and in Progression towards Type 1 Diabetes (2015) — 1,065 citations
- Identifying personal microbiomes using metagenomic codes (2015) — 456 citations
- Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases (2019) — 2,600 citations
- Relating the metatranscriptome and metagenome of the human gut (2014) — 656 citations
- Multivariable association discovery in population-scale meta-omics studies (2021) — 2,098 citations
- High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED (2015) — 312 citations
- Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3 (2020) — 1,805 citations
- Variation in Microbiome LPS Immunogenicity Contributes to Autoimmunity in Humans. (2016) — 752 citations
- Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity (2016) — 977 citations
- Gut microbiome structure and metabolic activity in inflammatory bowel disease (2018) — 1,686 citations
- Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation. (2017) — 755 citations
- Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4 (2023) — 1,125 citations
- The human gut microbiome of early onset type 1 diabetes in the TEDDY study (2018) — 767 citations
- bioBakery: a meta’omic analysis environment (2017) — 310 citations