BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

By Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis, Evgenia V. Kriventseva, E. Zdobnov. Bioinform., 2015

11,378 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/a8a294704715ec82ac91f129734bf05ddf9bde14

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

1. Mark Borodovsky
2. Alexandre Lomsadze
3. Todd P. Michael
4. Christophe Dessimoz
5. J. Doležel
6. Adrian M. Altenhoff
7. Katharina Jasmin Hoff
8. Natasha M. Glover

In Molecular Biology

1. Mark Borodovsky
2. Tomás Bruna
3. Alexandre Lomsadze
4. Katharina Jasmin Hoff
5. Mario Stanke
6. Sergey Koren
7. Adam M. Phillippy
8. Christophe Dessimoz

Citations in the corpus

• Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies (2018, neutral): “0.1 [24].”
• Symbiodinium Functional Diversity in the Coral Siderastrea siderea Is Influenced by Thermal Stress and Reef Environment, but Not Ocean Acidification (2018, methodology): “Transcriptome contiguity analysis (Martin and Wang, 2011) and Benchmarking Universal Single-Copy Orthologs v2 (BUSCO; Simão et al., 2015) were used to assess Symbiodinium transcriptome quality and completeness.”
• A complete Cannabis chromosome assembly and adaptive admixture for elevated cannabidiol (CBD) content (2018, methodology): “We removed sites failing an exact test for Hardy-Weinberg at p-value of 1e-20 with a mid-p adjustment (52).”