Sergey Koren

Molecular Biology · 2008–2023

A researcher in the Science corpus: 25 papers; trusts 49 researchers and is trusted by 39 researchers here, as inferred from the citation graph.

Subfields

Molecular Biology — 649 citations into it; #938 of 17,773 by trust here, #271 by citations
Genetics — 225 citations into it
Plant Science — 208 citations into it; #2,243 of 8,232 by trust here, #386 by citations
Ecology — 108 citations into it; #1,880 of 10,717 by trust here, #3,198 by citations
Artificial Intelligence — 62 citations into it
Computational Biology & Bioinformatics — 32 citations into it
Food Science — 12 citations into it
Information Retrieval & Search — 10 citations into it

Whom Sergey Koren trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

Who trusts Sergey Koren overall

Papers from Sergey Koren's perspective

Ordered by how strongly the researchers Sergey Koren trusts endorse each paper. Same corpus, a different order for every researcher.

Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
An Eulerian path approach to DNA fragment assembly (Proceedings of the National Academy of Sciences of the United States of America)
Basic local alignment search tool.
A whole-genome assembly of Drosophila. (Science)
Identification of common molecular subsequences.
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (Nature Biotechnology)
Real-Time DNA Sequencing from Single Polymerase Molecules (Science)
The fragment assembly string graph (ECCB/JBI)
Limitations of next-generation genome sequence assembly (Nature Methods)
ALLPATHS: de novo assembly of whole-genome shotgun microreads. (Genome Research)

Their papers

Nanopore sequencing and assembly of a human genome with ultra-long reads (2017) — 1,714 citations
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (2014) — 901 citations
A framework for human microbiome research (2012) — 2,418 citations
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome (2019) — 1,512 citations
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation (2016) — 6,453 citations
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies (2020) — 3,144 citations
Structure, Function and Diversity of the Healthy Human Microbiome (2012) — 10,771 citations
Hybrid error correction and de novo assembly of single-molecule sequencing reads (2012) — 1,002 citations
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads (2020) — 634 citations
Mash: fast genome and metagenome distance estimation using MinHash (2015) — 2,878 citations
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly (2016) — 1,005 citations
Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) — 544 citations
One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly. (2015) — 402 citations
De novo assembly of haplotype-resolved genomes with trio binning (2018) — 439 citations
Aggressive assembly of pyrosequencing reads with mates (2008) — 574 citations
Towards complete and error-free genome assemblies of all vertebrate species (2020) — 2,673 citations
GAGE: A critical evaluation of genome assemblies and assembly algorithms. (2012) — 354 citations
Assembly Algorithms for Next-Generation Sequencing Data (2010) — 1,200 citations
A robust benchmark for detection of germline large deletions and insertions (2020) — 358 citations
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes (2020) — 428 citations