Mario Stanke
Molecular Biology · 2003–2023
A researcher in the Science corpus: 21 papers; trusts 50 researchers and is trusted by 41 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 244 citations into it; #558 of 17,773 by trust here, #2,137 by citations
- Genetics — 69 citations into it; #1,956 of 6,854 by trust here, #1,251 by citations
- Plant Science — 63 citations into it
- Cancer Research — 10 citations into it
- Parasitology — 8 citations into it
- Epidemiology — 5 citations into it
Whom Mario Stanke trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- W. James Kent
- Ian Korf
- Genís Parra
- Stephan Waack
- Terence P. Speed
- Rufang Yeh
- Enrique Blanco
- Roderic Guigó
- Paul Flicek
- Lee P. Lim
Who trusts Mario Stanke overall
- Tomás Bruna
- Mark Yandell
- Oliver Keller
- Katharina Jasmin Hoff
- Alexandre Lomsadze
- Stephan Waack
- James E. Galagan
- Burkhard Morgenstern
- Ian Korf
- Mark Borodovsky
Papers from Mario Stanke's perspective
Ordered by how strongly the researchers Mario Stanke trusts endorse each paper. Same corpus, a different order for every researcher.
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Basic local alignment search tool.
- Computational inference of homologous gene structures in the human genome. (Genome Research)
- GeneWise and Genomewise. (Genome Research)
- Gene prediction with a hidden Markov model and a new intron submodel (European Conference on Computational Biology)
- AUGUSTUS: a web server for gene finding in eukaryotes (Nucleic Acids Res.)
- GENCODE: producing a reference annotation for ENCODE (Genome Biology)
- Gene finding in novel genomes (BMC Bioinformatics)
- Human-mouse alignments with BLASTZ. (Genome Research)
- Identification of common molecular subsequences.
Their papers
- Using native and syntenically mapped cDNA alignments to improve de novo gene finding (2008) — 2,184 citations
- AUGUSTUS: a web server for gene finding in eukaryotes (2004) — 1,315 citations
- Gene prediction with a hidden Markov model and a new intron submodel (2003) — 1,588 citations
- Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources (2006) — 1,271 citations
- Predicting Genes in Single Genomes with AUGUSTUS (2018) — 355 citations
- AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints (2005) — 1,439 citations
- BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS (2016) — 1,039 citations
- AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome (2006) — 348 citations
- AUGUSTUS: ab initio prediction of alternative transcripts (2006) — 2,513 citations
- Genome Sequence of the Pea Aphid Acyrthosiphon pisum (2010) — 1,258 citations
- BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database (2020) — 1,454 citations
- A novel hybrid gene prediction method employing protein multiple sequence alignments (2011) — 539 citations
- The Amphimedon queenslandica genome and the evolution of animal complexity (2010) — 1,023 citations
- Whole-Genome Annotation with BRAKER (2019) — 573 citations
- The genome of the model beetle and pest Tribolium castaneum (2008) — 1,375 citations
- BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA (2023) — 587 citations
- TSEBRA: transcript selector for BRAKER (2021) — 294 citations
- This Provisional PDF corresponds to the article as it appeared upon acceptance. Fully formatted PDF and full text (HTML) versions will be made available soon. Finding the missing honey bee genes: lessons learned from a genome upgrade (2014) — 318 citations
- Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species (2010) — 849 citations
- The genome of the blood fluke Schistosoma mansoni (2009) — 1,033 citations