Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression.

By A. Shilatifard. Annual Review of Biochemistry, 2006

1,163 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/77cc1e0eeb2a9ce2ee4313078ac8ae2f3bf1fe32

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Citations in the corpus

The complex language of chromatin regulation during transcription (2007, background): “H2BK123 then becomes de-ubiquitylated, allowing H3K36 to be methylate”
Covalent modifications of histones during development and disease pathogenesis (2007, background): “dtd" [ ]> A nucleosome contains 146 bp of DNA wrapped twice around an octamer composed of two copies of each histone protein: H2A, H2B, H3 and H4 (refs”
Histone Lysine Methylation Dynamics: Establishment, Regulation, and Biological Impact (2012, positive): “This subject has been well reviewed (Kouzarides, 2007; Li et al., 2007; Shilatifard, 2006; Smith and Shilatifard, 2010); therefore, we will highlight key paradigms in transcriptional regulation in the context of the genomic data in the subsequent sections.”
The role of chromatin during transcription. (2007, background): “The distribution of histones and their modifications are mapped on an arbitrary gene relative to its promoter (5 0 IGR), ORF, and 3 0 IGR (original references were reviewed in Shilatifard, 2006; Workman, 2006).”
Histone ubiquitination: triggering gene activity. (2008, background): “PAF is a complex comprising Paf1, Rtf1, Ctr9, Leo1, and Cdc73 that associates with initiating and elongating RNA polymerase II (reviewed in Shilatifard, 2006).”
Plant genomic DNA methylation in response to stresses： Potential applications and challenges in plant breeding (2009, background): “[17] Shilatifard A.”
The Language of Histone Crosstalk (2010, background): “Another well-characterized example is the requirement of histone H2Bmonoubiquitination for proper H3K4 methylation by the H3K4 methylase complex COMPASS (Figure 1B) (Shilatifard, 2006).”
MLL translocations, histone modifications and leukaemia stem-cell development (2007, background): “Methylation of histone H3 on lysine residue 4 (H3K4) by some members of the TrxG is most often associated with positive regulation of gene expression, whereas methylation of histone H3 on lysine residue 27 (H3K27) by PcG members represses gene expression (reviewed in Ref”
Histone Methylation Dynamics and Gene Regulation Occur through the Sensing of One-Carbon Metabolism (2015, background): “To test whether these alterations were sufficient to induce changes in histone methylation, we considered the relative levels of several histone methylation marks involving trimethylation at lysines 4, 9, and 27 that are each known to have substantial roles defining chromatin states, most notably at”
Nucleosome positioning and gene regulation: advances through genomics (2009, background): “Because misregulation of nucleosomes can lead to developmental defects and cance”
Histone hypercitrullination mediates chromatin decondensation and neutrophil extracellular trap formation (2009, background): “Posttranslational modifi cation of histone proteins such as acetylation, phosphorylation, and methylation regulates various chromatin functions, including transcription, DNA damage repair, and chromatin condensation/decondensation ( Shilatifard, 2006 ; Kouzarides, 2007 ; Li et al., 2007 ).”
Is folic acid good for everyone? (2008, background): “” Although it was originally thought that histone methylation is effectively irreversible (183), recent work has shown that specific enzymes exist that can remove the methyl residues (118, 184, 185).”
Differential chromatin marking of introns and expressed exons by H3K36me3 (2009, background): “(3) ubiq: genes annotated or expected to be actively transcribed in all nuclei.”
Pre-mRNA processing reaches back to transcription and ahead to translation. (2009, neutral): “Set2 similarly trimethylates H3K36 and in this case is recruited by interaction with CTD Ser2P (Li et al., 2007; Shilatifard, 2006).”
Quantitative interaction proteomics and genome-wide profiling of epigenetic histone marks and their readers. (2010, background): “See also Figure S3 and Tables S3 and S4. suggest that this domain is also capable of recognizing H3K36me3, which is associated with elongation of transcription and peaks in coding regions of genes (Shilatifard, 2006).”