The complex language of chromatin regulation during transcription

By S. Berger. Nature, 2007

2,862 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/ab251a088ee0ad2417bfbe896c7bc7edfedf2520

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In Molecular Biology

Citations in the corpus

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors (2012, background): “Nonetheless, some TFs are capable of remodeling nucleosomes in the absence of additional factors, and other TFs can recruit nucleosome remodelers to reposition or evict nucleosomes and expose TF binding sites (Berger 2007; Clapier and Cairns 2009).”
Epigenetics for ecologists. (2007, background): “The different classes of processes are not independent from each other but often regulate gene activity in a complex, interactive fashion (Grant-Downton & Dickinson 2005; Berger 2007).”
The Role of Snail in EMT and Tumorigenesis (2013, background): “acetylation, phosphorylation and methylation, control gene expression by altering chromatin structure [70-72].”
Epigenetics and the embodiment of race: Developmental origins of US racial disparities in cardiovascular health (2009, background): “We argue that the embodiment of social and material environments through developmental and epigenetic processes helps explain the persistence of biological American Journal of Human Biology CVD disparities across racial categories that are socially rather than genetically defined (Krieger, 2005).”
Inhibitors of Class 1 Histone Deacetylases Reverse Contextual Memory Deficits in a Mouse Model of Alzheimer's Disease (2010, background): “Histone acetyltransferases (HATs) catalyze the acetylation of lysine residues on core histone proteins, relaxing chromatin structure and facilitating gene transcription (Berger, 2007; Jenuwein and Allis, 2001; Kouzarides, 2007).”
YTH Domain: A Family of N6-methyladenosine (m6A) Readers (2018, background): “The regulatory role of m(6)A on RNA molecules is similar to that of epigenetic marks on chromatin [34], which could be achieved in two ways, i.”
Lysine Glutarylation Is a Protein Post-Translational Modification Regulated by SIRT5 (2014, background): “These PTM enzymes have important roles in modulation of chromatin structure and transcriptional regulation (Berger, 2007; Chi et al., 2010).”
Transcriptional and Epigenetic Mechanisms of Addiction (2011, background): “Numerous types of post-translational modifications of the amino-terminal tails of histones alter chromatin compaction to create more 'open' states (euchromatin, which is transcriptionally permissive) versus 'closed' states (heterochromatin, which is transcriptionally repressive”
SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways (2013, background): “…of numerous PTMs; e.g., acetylation, methylation, biotinylation, ubiquitination and ubiquitin-likemodifications, butyrylation, propionylation, crotonylation, malonylation, and succinylation (Berger, 2007; Chen et al., 2007; Peng et al., 2011; Tan et al., 2011; Xie et al., 2012; Zhang et al., 2011).”
ChIP-Seq: advantages and challenges of a maturing technology (2009, background): “Recent advances suggest that this interplay between chromatin and transcription is dynamic and more complex than previously appreciate”
Stressful 'memories' of plants: evidence and possible mechanisms (2007, background): “It has been suggested that this dynamic behaviour could leave behind a record of gene activity in so-called ‘memory’ marks, which indicate either dynamic activity, memory of activity or poising for future activity [47].”