Identification of microRNAs of the herpesvirus family

By S. Pfeffer, A. Sewer, M. Lagos‐Quintana, R. Sheridan, Christopher Sander, Friedrich A. Grässer, L. V. van Dyk, C Kiong Ho, Stewart Shuman, Minchen Chien and 9 more. Nature Methods, 2005

1,241 citations recorded by the source corpus.

Subfields: Cancer Research, Epidemiology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/6cfb5387d8ff9f183bce202934eb506f2569ade0

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Citations in the corpus

iArc monogrAphs on the evAluAtion oF cArcinogenic risks to humAns (2012, background): “In addition, a long transcript extending through ORF K12 represents the precursor RNA for the KSHV microRNAs (Cai et al., 2005; Pfeffer et al., 2005; Samols et al., 2005).”
Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. (2007, positive): “Small RNA Cloning and Sequencing Small RNA cloning was performed as described in Pfeffer et al. (2005), and a detailed protocol is available upon request.”
A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses. (2006, methodology): “Three groups have recently reported extensive cloning analyses of KSHV miRNAs (Cai et al. 2005; Pfeffer et al. 2005; Samols et al. 2005); using our method, we were able to identify most of the KSHV miRNAs previously identified by cloning.”
Metazoan MicroRNAs (2018, background): “For example, some miRNAs from murine γ-herpesvirus 68 (MHV68) derive from hairpins transcribed in tandem with tRNA-like molecules (Pfeffer et al., 2005), and miRNAs from a primate γ-herpesvirus derive from hairpins transcribed in tandem with Sm class snRNAs (Cazalla et al., 2011).”
RNA-based antiviral immunity (2010, background): “dsDNA Herpes simplex virus 1 Homo sapiens miRNAs (16) ND ND 109,110”
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (2008, methodology): “Sequencing-based applications for identifying and profiling miRNAs have been hindered by laborious cloning techniques and the expense of capillary DNA sequencing (Pfeffer et al. 2005; Cummins et al. 2006).”
MicroRNAs in Common Human Diseases (2012, background): “Some preliminary evidence even suggested that RNA viruses may also encode miRNAs in spite of small genome sizes [66–68]; however, these findings have not been verified independently [65,69].”
Aberrant Expression of Oncogenic and Tumor-Suppressive MicroRNAs in Cervical Cancer Is Required for Cancer Cell Growth (2008, background): “Moreover, we were unable to identify a single HPV16-derived miRNA from HPV16 CaSki cells by this approach, although other nuclear DNA viruses do encode miRNAs [46], including EBV [47]; KSHV [48–50]; HSV-1 [51,52]; and SV40 [53].”
Kaposi's sarcoma and its associated herpesvirus (2010, background): “The KSHV-encoded miRNAs are expressed in latently infected cell”
Genomics of microRNA. (2006, background): “Several miRNA genes in the mouse g-herpesvirus 68 (MHV68) are apparently transcribed by Pol III, indicating that some viral miRNAs have evolved independently and such miRNAs could be generated through a distinct biogenetic pathway [ 47 ].”
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases (2006, background): “Numerous small noncoding RNAs, miRNAs involved in RNA-mediated interference (RNAi), have been identifie”
A mammalian microRNA expression atlas based on small RNA library sequencing. (2007, methodology): “Most samples were cloned using preadenylated 30 adaptor oligonucleotides and the T4 RNA ligase Rnl2(1–249) as described (Pfeffer et al., 2005).”