Kathryn E. Holt

Molecular Biology · 2014–2021

A researcher in the Science corpus: 13 papers; trusts 29 researchers and is trusted by 12 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 155 citations into it; #3,945 of 17,773 by trust here, #5,968 by citations
• Ecology — 37 citations into it
• Genetics — 37 citations into it; #2,951 of 6,854 by trust here, #5,057 by citations
• Plant Science — 37 citations into it; #4,931 of 8,232 by trust here, #4,310 by citations
• Molecular Medicine — 27 citations into it; #110 of 296 by trust here, #139 by citations
• Artificial Intelligence — 26 citations into it
• Food Science — 14 citations into it
• Microbiology — 8 citations into it

Whom Kathryn E. Holt trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Heng Li
2. Ryan R. Wick
3. Ben Langmead
4. Steven L. Salzberg
5. Robert Vaser
6. Louise M. Judd
7. Brian D. Ondov
8. Sergey Koren
9. Thomas L. Madden
10. Stefan Kurtz

Who trusts Kathryn E. Holt overall

1. Ryan R. Wick
2. Clara Delahaye
3. Louise M. Judd
4. William R. Miller

Papers from Kathryn E. Holt's perspective

Ordered by how strongly the researchers Kathryn E. Holt trusts endorse each paper. Same corpus, a different order for every researcher.

1. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing (J. Comput. Biol.)
2. The Sequence Alignment/Map format and SAMtools (Bioinform.)
3. A whole-genome assembly of Drosophila. (Science)
4. Hybrid error correction and de novo assembly of single-molecule sequencing reads (Nature Biotechnology)
5. BLAST+: architecture and applications
6. PBSIM: PacBio reads simulator - toward accurate genome assembly (Bioinform.)
7. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments (PLoS ONE)
8. Adaptive seeds tame genomic sequence comparison.
9. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory (BMC Bioinformatics)
10. Repetitive DNA and next-generation sequencing: computational challenges and solutions (Nature reviews genetics)

Their papers

• SRST2: Rapid genomic surveillance for public health and hospital microbiology labs (2014) — 996 citations
• Bandage: interactive visualization of de novo genome assemblies (2015) — 2,534 citations
• Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads (2016) — 7,615 citations
• Performance of neural network basecalling tools for Oxford Nanopore sequencing (2019) — 1,539 citations
• Completing bacterial genome assemblies with multiplex MinION sequencing (2017) — 939 citations
• Trycycler: consensus long-read assemblies for bacterial genomes (2021) — 454 citations
• Polypolish: Short-read polishing of long-read bacterial genome assemblies (2021) — 580 citations
• A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex (2021) — 892 citations
• Population genomics of Klebsiella pneumoniae (2020) — 955 citations
• Benchmarking of long-read assemblers for prokaryote whole genome sequencing (2019) — 302 citations
• FastSpar: rapid and scalable correlation estimation for compositional data (2018) — 323 citations
• Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health (2015) — 1,213 citations
• The infant airway microbiome in health and disease impacts later asthma development (2015) — 849 citations