Ben Langmead
Molecular Biology · 2009–2022
A researcher in the Science corpus: 9 papers; trusts 32 researchers and is trusted by 222 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 95 citations into it; #85 of 17,773 by trust here, #299 by citations
- Genetics — 24 citations into it
- Artificial Intelligence — 22 citations into it; #1,659 of 35,345 by trust here, #896 by citations
- Ecology — 16 citations into it
- Computer Networks and Communications — 9 citations into it
- Algorithms & Complexity — 8 citations into it
- Information Systems — 6 citations into it
- Computational Biology & Bioinformatics — 5 citations into it
Whom Ben Langmead trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Heng Li
- Paolo Ferragina
- M. Burrows
- Giovanni Manzini
- Steven L. Salzberg
- Michael C. Schatz
- Muthu Dayalan
- Daehwan Kim
- Temple F. Smith
- Ruiqiang Li
Who trusts Ben Langmead overall
- Heng Li
- Daehwan Kim
- Kasper D. Hansen
- Ronald C. Taylor
- Steven L. Salzberg
- Nicolas Dierckxsens
- Benjamin Langmead
- M. Lozano
- Ryan R. Wick
- Brian J. Haas
Papers from Ben Langmead's perspective
Ordered by how strongly the researchers Ben Langmead trusts endorse each paper. Same corpus, a different order for every researcher.
- Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry (Nature)
- A Block-sorting Lossless Data Compression Algorithm
- Opportunistic data structures with applications
- Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing (Nature Genetics)
- Basic local alignment search tool.
- Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
- Mapping short DNA sequencing reads and calling variants using mapping quality scores. (Genome Research)
- SOAP: short oligonucleotide alignment program (Bioinform.)
Their papers
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (2009) — 22,181 citations
- Fast gapped-read alignment with Bowtie 2 (2012) — 51,055 citations
- HISAT: a fast spliced aligner with low memory requirements (2015) — 20,246 citations
- Improved metagenomic analysis with Kraken 2 (2019) — 5,987 citations
- Searching for SNPs with cloud computing (2009) — 523 citations
- Scaling read aligners to hundreds of threads on general-purpose processors (2017) — 797 citations
- Aligning short sequencing reads with Bowtie (2010) — 1,288 citations
- Metagenome analysis using the Kraken software suite (2022) — 621 citations
- Cloud Computing and the DNA Data Race (2010) — 301 citations