Anastassis Perrakis
Molecular Biology · 2001–2023
A researcher in the Science corpus: 12 papers; trusts 18 researchers and is trusted by 15 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 104 citations into it; #2,682 of 17,773 by trust here, #3,044 by citations
- Materials Chemistry — 77 citations into it; #1,605 of 11,513 by trust here, #3,689 by citations
- Computational Biology & Bioinformatics — 47 citations into it
- Spectroscopy — 19 citations into it
- Evaluation & Benchmarks — 11 citations into it
- Computational Chemistry & Drug Discovery — 10 citations into it
- Mathematical Optimization — 5 citations into it
Whom Anastassis Perrakis trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Randy J. Read
- Robbie P. Joosten
- A. Brunger
- Ram Seshadri
- G. Vriend
- G. Murshudov
- Kevin Cowtan
- Rob W. W. Hooft
- K. Smith‐Miles
- A. Vagin
Who trusts Anastassis Perrakis overall
- Marcin Pawlowski
- T. Croll
- Binchen Mao
- Robbie P. Joosten
- Janusz M. Bujnicki
- Randy J. Read
- R. Guan
- G. Taylor
- Paul D. Adams
- T. C. Terwilliger
Papers from Anastassis Perrakis's perspective
Ordered by how strongly the researchers Anastassis Perrakis trusts endorse each paper. Same corpus, a different order for every researcher.
- Improved methods for building protein models in electron density maps and the location of errors in these models.
- Errors in protein structures
- PROCHECK: a program to check the stereochemical quality of protein structures
- Structure validation in chemical crystallography
- Structure validation by Cα geometry: ϕ,ψ and Cβ deviation
- Accurate Bond and Angle Parameters for X-ray Protein Structure Refinement
- Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7
- Intensity statistics in twinned crystals with examples from the PDB.
- SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.
- On the treatment of negative intensity observations
Their papers
- Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7 (2008) — 1,645 citations
- Target Highlights in CASP9: Experimental Target Structures for the Critical Assessment of Techniques for Protein Structure Prediction (2011) — 24 citations
- A New Generation of Crystallographic Validation Tools for the Protein Data Bank (2011) — 445 citations
- Developments in the CCP4 molecular-graphics project. (2004) — 582 citations
- AlphaFill: enriching AlphaFold models with ligands and cofactors (2022) — 396 citations
- RNA-binding protein Dnd1 inhibits microRNA access to target mRNA. (2007) — 794 citations
- PDB_REDO: constructive validation, more than just looking for errors (2012) — 197 citations
- Automatic rebuilding and optimization of crystallographic structures in the Protein Data Bank (2011) — 93 citations
- ARP/wARP and molecular replacement. (2001) — 465 citations
- ARP/wARP and automatic interpretation of protein electron density maps. (2003) — 543 citations
- The PDB_REDO server for macromolecular structure model optimization (2014) — 772 citations
- The CCP4 suite: integrative software for macromolecular crystallography (2023) — 444 citations