The PDB_REDO server for macromolecular structure model optimization
By Robbie P. Joosten, F. Long, G. Murshudov, Anastassis Perrakis. 2014
772 citations recorded by the source corpus.
The PDB_REDO pipeline aims to improve macromolecular structures by optimizing the crystallographic refinement parameters and performing partial model building. Here, algorithms are presented that allowed a web-server implementation of PDB_REDO, and the first user results are discussed.
Subfields: Materials Chemistry, Molecular Biology
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Materials Chemistry
- Robbie P. Joosten
- G. Vriend
- T. Croll
- Elmar Krieger
- Tim A. H. te Beek
- Anastassis Perrakis
- G. Murshudov
- Mikhail Markovsky
In Molecular Biology
- Robbie P. Joosten
- G. Vriend
- T. Croll
- Elmar Krieger
- Tim A. H. te Beek
- Anastassis Perrakis
- G. Murshudov
- Mikhail Markovsky
Citations in the corpus
- ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps (2018, methodology): “In particular, the PDB-REDO server (Joosten et al., 2014) implements an automated pipeline of optimized refinement and local rebuilding (peptide-bond flips and rotamer adjustments) which can often significantly improve upon deposited models.”
- A series of PDB-related databanks for everyday needs (2014, methodology): “PDB REDO files can be created using the PDB REDO web server (24).”