Structure validation by Cα geometry: ϕ,ψ and Cβ deviation
By S. Lovell, Ian W. Davis, W. B. Arendall, P. D. de Bakker, J. Word, Michael G. Prisant, Jane S. Richardson, David C Richardson. 2003
4,031 citations recorded by the source corpus.
Subfields: Materials Chemistry, Molecular Biology
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Materials Chemistry
- Paul D. Adams
- Randy J. Read
- Pavel V. Afonine
- T. C. Terwilliger
- T. Croll
- Nigel W. Moriarty
- G. Murshudov
- A. McCoy
In Molecular Biology
- Randy J. Read
- Paul D. Adams
- Pavel V. Afonine
- T. C. Terwilliger
- T. Croll
- A. McCoy
- Nigel W. Moriarty
- G. Murshudov
Citations in the corpus
- Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix (2019, background): “C deviations diagnose side chain–backbone incompatibility around the C tetrahedron (Lovell et al., 2003) except when covalent geometry restraints need to be so tight at low resolution that a C atom cannot deviate from ideal even if its position is incorrect.”
- Features and development of Coot (2010, neutral): “The background of the plot shows frequency data for Ramachandran angles using the Richardsons’ data (Lovell et al. , 2003).”
- Overview of the CCP4 suite and current developments (2011, methodology): “The supplementary program Sloop (Cowtan, unpublished program) builds missing loops using fragments taken from the Richardson’s Top500 library of structures (Lovell et al., 2003) to fill gaps in the chain.”
- The Buccaneer software for automated model building. 1. Tracing protein chains. (2006, methodology): “The Ramachandran data used here is from the ‘Top 500’ structures database of Lovell et al. (2003).”
- A short history of SHELX. (2008, methodology): “…were deliberately left out so that backbone and side-chain torsion angles could be used for verification purposes, e.g. using the molprobity (Lovell et al., 2003) server at http://molprobity.biochem.duke.edu/, but this verification shows, especially for refinements against twinned data at…”
- MolProbity: all-atom structure validation for macromolecular crystallography (2009, positive): “Therefore, MolProbity evaluates the resulting overall distortion of the C position from ideality, called the C deviation (Lovell et al., 2003).”