PROCHECK: a program to check the stereochemical quality of protein structures

By Roman A. Laskowski, M. MacArthur, D. Moss, Janet M. Thornton. 1993

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Citations in the corpus

Structure of a rabbit muscle fructose-1,6-bisphosphate aldolase A dimer variant (2008, positive): “Analysis of the Ramachandran plot defined by PROCHECK (Laskowski et al., 1993) showed good statistics for the model, with 91.8% of residues in the most favorable regions and 8.2% of residues in additionally allowed regions for D128V aldolase.”
PDBsum: Structural summaries of PDB entries (2017, background): “Perhaps of particular use is the facility allowing users to submit their own structures and retrieve a full set of PDBsum analyses, including full PROCHECK results, interaction plots, and domain architecture networks.”
An overview of the structures of protein-DNA complexes (2000, unknown): “A2(103-160), B1(5-75), B2(102-161) 1oct C1(5-75) Oct-1 POU domain H.”
A New Generation of Crystallographic Validation Tools for the Protein Data Bank (2011, methodology): “The program PROCHECK (Laskowski et al., 1993) was the ﬁrst widely-used tool for the validation of protein structures and the ﬁrst to introduce Ramachandran criteria (developed from the backbone treatment in Ramachandran et al., 1963), and it had an important impact on the quality of structures…”
Comparative Protein Structure Modeling Using Modeller (2006, background): “…database methods are limited because the number of possible conformations increases exponentially with the length of a loop, and until the late 1990s only loops up to 7 residues long could be modeled using the database of known protein structures (Fidelis et al., 1994; Lessel and Schomburg, 1994).”