Kira S. Makarova

Molecular Biology · 2001–2020

A researcher in the Science corpus: 26 papers; trusts 40 researchers and is trusted by 21 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 449 citations into it; #2,051 of 17,773 by trust here, #537 by citations
• Ecology — 120 citations into it; #5,939 of 10,717 by trust here, #3,054 by citations
• Genetics — 103 citations into it; #4,709 of 6,854 by trust here, #828 by citations
• Computational Biology & Bioinformatics — 45 citations into it
• Business and International Management — 20 citations into it; #992 of 1,035 by trust here, #50 by citations
• Cellular and Molecular Neuroscience — 5 citations into it

Whom Kira S. Makarova trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Stephen F. Altschul
2. Eugene V. Koonin
3. Kazutaka Katoh
4. Robert C. Edgar
5. Michael Y. Galperin
6. Johannes Söding
7. L. Marraffini
8. Daniel H. Haft
9. Morgan N. Price
10. Rodolphe Barrangou

Who trusts Kira S. Makarova overall

1. Eugene V. Koonin
2. Jennifer A. Doudna
3. Yuri I. Wolf
4. Jaime Huerta-Cepas
5. Michael Y. Galperin
6. Frank Hille
7. Rodolphe Barrangou
8. Sergey A. Shmakov
9. P. Hsu
10. Ana Laura Grazziotin

Papers from Kira S. Makarova's perspective

Ordered by how strongly the researchers Kira S. Makarova trusts endorse each paper. Same corpus, a different order for every researcher.

1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
2. The Pfam protein families database
3. Basic local alignment search tool.
4. Identification of genes that are associated with DNA repeats in prokaryotes (Molecular Microbiology)
5. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
6. TIGRFAMs: a protein family resource for the functional identification of proteins (Nucleic Acids Res.)
7. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments (PLoS ONE)
8. Distinguishing homologous from analogous proteins.
9. The COG database: an updated version includes eukaryotes
10. A genomic perspective on protein families.

Their papers

• Expanded microbial genome coverage and improved protein family annotation in the COG database (2014) — 1,435 citations
• Evolution and classification of the CRISPR-Cas systems (2011) — 2,438 citations
• Structure and function of virion RNA polymerase of a crAss-like phage (2020) — 27 citations
• Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes (2008) — 2,499 citations
• An updated evolutionary classification of CRISPR–Cas systems (2015) — 2,294 citations
• Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA (2014) — 2,037 citations
• Cpf1 is a single RNA-guided endonuclease of a class 2 CRISPR-Cas system. (2015) — 4,241 citations
• Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales (2015) — 254 citations
• A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes (2004) — 1,020 citations
• Discovery and functional characterization of diverse Class 2 CRISPR-Cas systems (2015) — 1,137 citations
• Horizontal gene transfer in prokaryotes: quantification and classification. (2001) — 1,203 citations
• Genome Sequence and Comparative Analysis of the Solvent-Producing Bacterium Clostridium acetobutylicum (2001) — 833 citations
• C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector (2016) — 2,074 citations
• Comparative genomics of the lactic acid bacteria (2006) — 1,402 citations
• Crystal structure of Cpf1 in complex with guide RNA and target DNA (2016) — 657 citations
• Annotation and Classification of CRISPR-Cas Systems (2015) — 359 citations
• Diversity and evolution of class 2 CRISPR–Cas systems (2017) — 927 citations
• Genome of the Extremely Radiation-Resistant Bacterium Deinococcus radiodurans Viewed from the Perspective of Comparative Genomics (2001) — 737 citations
• Diversity, classification and evolution of CRISPR-Cas systems (2017) — 1,234 citations
• Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems (2016) — 608 citations