Comparative genomics of the lactic acid bacteria

By Kira S. Makarova, A. Slesarev, Yuri I. Wolf, A. Sorokin, Boris G. Mirkin, Eugene V. Koonin, A. Pavlov, N. V. Pavlova, Valeri N. Karamychev, N. Polouchine and 40 more. Proceedings of the National Academy of Sciences of the United States of America, 2006

1,402 citations recorded by the source corpus.

Subfields: Food Science, Molecular Biology, Nutrition and Dietetics

View Paper: https://www.semanticscholar.org/paper/cb608d29d462d085bd848e0206faf30886a964f2

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Citations in the corpus

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome (2018, background): “…the genomic content of more than 100,000 microbial isolates has been characterized and used to study the gene pool, adaptation capabilities, and evolution of microorganisms ( Smith et al., 1997 ; Alm et al., 1999 ; Makarova et al., 2006 ; Kumar et al., 2011 ; Fernández-Gómez et al., 2013 ).”
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world (2008, background): “Well-characterized cases in point are Rickettsia (247,248), Wolbachia (249), pathogenic Mycobacteria (250,251) and some lactobacilli (252).”
Stress Physiology of Lactic Acid Bacteria (2016, background): “In most Firmicutes, up to three genes code for (p)ppGpp synthetases (Rels): the bifunctional RelA/SpoT homolog, also named RelA or Rel (RSH), and the small RelQ and RelP proteins, with only a (p)ppGpp synthetase domain (119).”
Lactic Acid Bacteria in Hydrogen-Producing Consortia: On Purpose or by Coincidence? (2013, background): “The natural occurrence of lactic acid bacteria on plants (fruits, vegetables and grains) as well as in milk permitted their use in biotechnology (Makarova et al., 2006).”
Ecological Role of Lactobacilli in the Gastrointestinal Tract: Implications for Fundamental and Biomedical Research (2008, result): “The analysis of genome sequences for several intestinal Lactobacillus species (L. acidophilus, L. salivarius, L. plantarum, L. gasseri, and L. johnsonii) did not reflect an adaptation to the intestinal tract, as the physiology based on genome annotations is in striking contrast to that of the domina”
Diversity, Activity, and Evolution of CRISPR Loci in Streptococcus thermophilus (2007, background): “Interestingly, LMD-9 genome sequences located upstream of CRISPR3 repeats and downstream of the imperfect repeat are highly similar to the 1402 HORVATH ET AL.”
Lactobacilli in sourdough fermentation (2007, neutral): “(Makarova et al., 2006), Lactobacillus plantarum (Kleerebezem et al.”
Ability of Lactobacillus brevis strains to degrade food phenolic acids (2010, neutral): “NC_008497) (Makarova et al., 2006).”