Julian Parkhill
Molecular Biology · 2000–2020
A researcher in the Science corpus: 37 papers; trusts 9 researchers and is trusted by 15 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 325 citations into it; #2,078 of 17,773 by trust here, #292 by citations
- Genetics — 104 citations into it
- Ecology — 83 citations into it; #1,106 of 10,717 by trust here, #1,602 by citations
- Plant Science — 38 citations into it
- Artificial Intelligence — 22 citations into it
Whom Julian Parkhill trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Julian Parkhill overall
- Robert C. Edgar
- L. Marraffini
- Rodolphe Barrangou
- E. Sontheimer
- Eugene V. Koonin
- L. Waters
- Kira S. Makarova
- Jennifer A. Doudna
- Ibtissem Grissa
- Rotem Sorek
Papers from Julian Parkhill's perspective
Ordered by how strongly the researchers Julian Parkhill trusts endorse each paper. Same corpus, a different order for every researcher.
- The Pfam protein families database
- ABySS: a parallel assembler for short read sequence data. (Genome Research)
- Assembling large genomes with single-molecule sequencing and locality-sensitive hashing (Nature Biotechnology)
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- The COG database: an updated version includes eukaryotes
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments (PLoS ONE)
- MUSCLE: a multiple sequence alignment method with reduced time and space complexity
- Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
Their papers
- A human gut microbial gene catalog established by metagenomic sequencing (2010) — 11,043 citations
- Faculty Opinions recommendation of A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. (2006) — 416 citations
- Genome sequence of Yersinia pestis, the causative agent of plague (2001) — 1,229 citations
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses (2014) — 3,031 citations
- Dominant and diet-responsive groups of bacteria within the human colonic microbiota (2011) — 1,597 citations
- Artemis: sequence visualization and annotation (2000) — 3,225 citations
- An integrated catalog of reference genes in the human gut microbiome (2014) — 1,947 citations
- Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota (2007) — 1,057 citations
- ACT: the Artemis comparison tool (2005) — 1,636 citations
- Genome Project Standards in a New Era of Sequencing (2009) — 438 citations
- Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. (2004) — 970 citations
- High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease (2011) — 693 citations
- Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica (2003) — 1,013 citations
- Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) (2002) — 3,106 citations
- Roary: rapid large-scale prokaryote pan genome analysis (2015) — 5,007 citations
- Circlator: automated circularization of genome assemblies using long sequencing reads (2015) — 1,076 citations
- Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database (2008) — 587 citations
- Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions (2013) — 596 citations
- Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study (2011) — 958 citations
- The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences (2000) — 2,022 citations