Artemis: sequence visualization and annotation

By Kim M Rutherford, Julian Parkhill, James Crook, T. Horsnell, P. Rice, M. Rajandream, B. Barrell. Bioinform., 2000

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration (2012, background): “Thereare a number of other desktop applications available for visualization of genomic data, particularly NGS data, including Tablet [2], BamView [3], Savant [4] and Artemis [5].”
Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv. (2002, background): “However, the protein which has been shown to be glycosylated and to have fibronectin-binding activity (Schorey et al., 1995) shares no significant sequence similarity with other proteins involved in molybdate uptake.”
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models (2006, methodology): “The download package contains also the program Artemis [ 29 ], which is used to visualize the output of SIGI-HMM.”
The genome sequence of Schizosaccharomyces pombe (2002, methodology): “The predictions were refined manually within the Artemis analysis and annotation too”
PomBase: a comprehensive online resource for fission yeast (2011, methodology): “Sequence features are curated in Chado using Artemis (15,16).”
A reference genome for common bean and genome-wide analysis of dual domestications (2014, methodology): “All resulting sequences in the BLAST output (E value < 1e-10) were manually inspected using the Artemis software tool (Rutherford et al. 2000).”