Prediction of plant microRNA targets.

By M. W. Rhoades, B. Reinhart, Lee P. Lim, C. Burge, B. Bartel, David P. Bartel. Cell, 2002

2,293 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/60c02e69eac126a7415c76869312b79e4a99f8b5

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In Plant Science

Citations in the corpus

Gene silencing by microRNAs: contributions of translational repression and mRNA decay (2011, background): “As mentioned earlier, it is well established that plant miRNAs recognize fully or nearly complementary mRNA targets and direct endonucleolytic mRNA cleavag”
New microRNAs from mouse and human. (2003, background): “Prediction of the targets of animal miRNAs remains difficult because these miRNAs show no more matches to mRNAs than random sequences, so that it must be assumed that few, if any, of the miRNAs will recognize their respective targets with near-perfect complementarity (Rhoades et al. 2002).”
Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana (2004, background): “miR161 targets several mRNAs coding for pentatricopeptide repeat proteins (PPRs), and miR163 was predicted to target several S-adenosylmethionine-dependent methyltransferases (SAMTs”
Genomic Organization, Differential Expression, and Interaction of SQUAMOSA Promoter-Binding-Like Transcription Factors and microRNA156 in Rice1[W] (2006, background): “Computational analysis indicated that some Arabidopsis SPL genes were also regulated by miRNA genes of the miRNA156 family (Rhoades et al., 2002; Bonnet et al., 2004).”
Plant microRNA: a small regulatory molecule with big impact. (2006, methodology): “A majority of these miRNAs affect plant traits by regulating the expression of transcription factors that influence cell fate determination (Rhoades et al., 2002; Mallory et al., 2004b).”
Control of Root Cap Formation by MicroRNA-Targeted Auxin Response Factors in Arabidopsisw⃞ (2005, background): “The Arabidopsis semidominant axr3-1 mutant carrying a single nucleotide substitution in an AUX/IAA gene (IAA17) has a short and agravitropic root without normal columella cell differentiation and DR5 reporter expression (Leyser et al., 1996; Rouse et al., 1998; Sabatini et al., 1999).”
Post-transcriptional small RNA pathways in plants: mechanisms and regulations. (2006, background): “However, many miRNA targets encode transcription factors that regulate a large number of unknown genes (Rhoades et al. 2002; Jones-Rhoades and Bartel 2004), among which could be a gene controlling virus proliferation.”
Functional diversity of miRNA in plants (2007, background): “miR156 probably targets a group of transcription factor genes known as squamosa promoter binding protein-like (SPL) [23], but the role of SPL genes in floral transition awaits further investigation.”
The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. (2004, background): “The wild-type AGO1 gene encodes an mRNA that naturally contains three mismatches with miR168 (Rhoades et al. 2002).”
Recent advances in arsenic accumulation and metabolism in rice (2010, methodology): “Two approaches—pattern matching (Rhoades et al. 2002) and the miRanda algorithm (Enright et al. 2003)—were used for the analysis.”
microRNA-directed phasing during trans-acting siRNA biogenesis in plants. (2005, background): “This is the second Argonaute family member identified as a miRNA target (Rhoades et al., 2002; Vaucheret et al., 2004).”
Human embryonic stem cells express a unique set of microRNAs. (2004, background): “In plants, miRNAs show a high degree of complementarity to transcription factors that are significant in development (Aukerman and Sakai, 2003; Chen, 2003; Llave et al., 2002b; Palatnik et al., 2003; Rhoades et al., 2002).”