microRNA-directed phasing during trans-acting siRNA biogenesis in plants.

By Edwards Allen, Zhixin Xie, Adam M. Gustafson, James C. Carrington. Cell, 2005

2,234 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/a36fc88a8854d23406991721c052375c98739ddd

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Citations in the corpus

Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants (2011, neutral): “miR395 also targets AST68, a low-affinity sulfate transporter [114].”
Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. (2006, background): “In light of the functions of ARF3 and ARF4 in organ asymmetry, these data reveal multiple roles for TAS3 ta-siRNA-mediated regulation of ARF genes in developmental timing and patterning.”
Regulation of Phosphate Homeostasis by MicroRNA in Arabidopsis[W] (2005, methodology): “59 rapid amplification of cDNA ends experiments identified cleaved transcripts of E2 corresponding to predicted target sequences in the 59 UTR, which supports the cleavage of the E2 transcript by recognizing miR399 (Allen et al., 2005).”
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. (2008, methodology): “Although an RDR6/DCL4 processing center has not been identified, RNA-processing centers with roles in silencing, such as P bodies (Liu et al., 2005), have been identified.”
Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis (2005, positive): “DCL2 is involved in the production of some viral siRNAs (Xie et al., 2004) and may substitute for DCL3 or DCL4 when they are absent (Gasciolli et al., 2005).”
Revisiting the principles of microRNA target recognition and mode of action (2009, background): “For example, a few plant miRNAs use slicing of non-coding (nc) transcripts to generate cleavage fragments that are sources of biologically active trans -acting siRNAs (tasiRNAs) following their conversion to dsRNA by cellular RNA-dependent RNA polymerase”
Micro RNAs and Short‐interfering RNAs in Plants (2007, background): “…primary transcript defines the 5’ and 3' ends of the transcript which can be converted into dsRNA by RDR6 and SGS3 and sets the 21-nt phase for accurate tasiRNA formation by DCL4 in Arabidopsis (Allen et al. 2005; Gasciolli et al. 2005; Yoshikawa et al. 2005; Xie et al. 2005; Axtell et al. 2006).”
A MicroRNA Superfamily Regulates Nucleotide Binding Site–Leucine-Rich Repeats and Other mRNAs[W][OA] (2012, background): “Both PPR and ARF mRNAs are targeted separately by secondary siRNAs and by miR161 (Rhoades et al., 2002; Allen et al., 2005; Yoshikawa et al., 2005), miR160, or miR167 (Rhoades et al.”
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. (2008, background): “cleavage of TAS3 is required to initiate the production of tasiR-NAs, which regulate the vegetative phase transition in Arabidopsis ( Allen et al., 2005; Axtell et al., 2006; Peragine et al., 2004; Vazquez et al., 2004; Xie et al., 2005).”
Control of translation and mRNA degradation by miRNAs and siRNAs. (2006, background): “However, it is now appreciated that some endogenous miRNAs in both plants and metazoans direct endonucleolytic cleavage (Llave et al. 2002; Yekta et al. 2004; Allen et al. 2005).”