Remodeling of yeast genome expression in response to environmental changes.

By Helen C. Causton, Bing Ren, S. S. Koh, Christopher T. Harbison, Elenita I. Kanin, E. Jennings, Tong Ihn Lee, H. True, Eric S. Lander, Richard A. Young. Molecular Biology of the Cell, 2001

1,472 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/2f94957be178fee5e6687c3330d625257d21f4eb

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Citations in the corpus

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. (2007, background): “These genes might encode plant core environmental stress response (PCESR) proteins with important functions in various stress response pathways as known for Saccharomyces cerevisiae and Schizosaccharomyces pombe (Causton et al., 2001; Chen et al., 2003).”
Systematic Functional Annotation and Visualization of Biological Networks (2016, background): “The ESR program enables the cell to cope with different types of exogenous perturbations by activating a general defense strategy that includes the deceleration of protein synthesis and the delay of cell cycle progression (Gasch et al., 2000; Causton et al., 2001; Gasch and Werner-Washburne, 2002).”
Evidence for nucleosome depletion at active regulatory regions genome-wide (2004, background): “; other genes, including some heat-shock proteins, are induce”
Oxidative stress: molecular perception and transduction of signals triggering antioxidant gene defenses. (2005, background): “In addition to induction/repression of antioxidant defense genes, ROS are known to similarly affect expression of a variety of other genes involved in different signaling pathways in microbes (28), yeast (45), plants (46), and animals (19).”
Osmotic Stress Signaling and Osmoadaptation in Yeasts (2002, background): “The mRNA level of about 220 to 300 genes (depending on the study [86, 191]) increases under a range of different stress conditions.”
Genome-wide expression analysis of yeast response during exposure to 4°C (2006, background): “jp/ iwahashi/), heat shock, osmotic stresses, and low temperature (Causton et al. 2001; Fujita et al. 2004; Gasch et al. 2000; Kitagawa et al. 2002; Sahara et al. 2002).”
Identification and distinct regulation of yeast TATA box-containing genes. (2004, background): “…set has 9% of genes designated as having high TBP occupancy (average log2 (TBP/input) 1.5). mental Response or Environmental Stress Response set, Causton et al., 2001; Gasch et al., 2000) were TATAcontaining, whereas only 6% (P-value 10 14) of the commonly stress-inhibited genes were…”
Role of duplicate genes in genetic robustness against null mutations (2003, methodology): “Expression (absolute transcript abundance) was estimated using available data measured by Affymetrix microarray experiment”
DNA Microarray-Mediated Transcriptional Profiling of the Escherichia coli Response to Hydrogen Peroxide (2001, background): “Two recent studies have examined the whole-genome expression pattern in Saccharomyces cerevisiae cells exposed to a variety of stress conditions including oxidative stress and heat shock (7, 11).”
Reactive oxygen species: metabolism, oxidative stress, and signal transduction. (2004, background): “Oxidative stress affects approximately 10% of the yeast transcriptome (19, 21, 43).”
Genome-wide map of nucleosome acetylation and methylation in yeast. (2005, neutral): “to oxidative stress (Causton et al., 2001).”