DNA Microarray-Mediated Transcriptional Profiling of the Escherichia coli Response to Hydrogen Peroxide

By M. Zheng, Xunde Wang, Lori J. Templeton, D. R. Smulski, R. Larossa, G. Storz. Journal of Bacteriology, 2001

861 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/75670ab4f1e5645380f6fb004d2d59253ddd8baf

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Citations in the corpus

Neutrophils to the ROScue: Mechanisms of NADPH Oxidase Activation and Bacterial Resistance (2017, background): “However, the expression of some of these proteins is enhanced under oxidative stress conditions in an OxyR and/or SoxRS-dependent manner, suggesting that increased levels of some DNA repair factors are required for resistance to ROS (Zheng et al., 2001; Imlay, 2008).”
Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: σS-Dependent Genes, Promoters, and Sigma Factor Selectivity (2005, background): “In fact, of the 22 genes that belong to the OxyR regulon (70), 10 genes were observed here to be under S control, including the core genes dps and yaiA, the noncore genes dsbG and hemH, and the sufABCDSE operon (data not shown).”
New concepts in reactive oxygen species and cardiovascular reperfusion physiology. (2004, background): “These induced proteins include antioxidants like Mn-SOD, catalase, glutathione reductase, as well as other protective systems such as NFkB, insulin receptors, glutaredoxin, hydroperoxidase I, alkylhydoperoxide reductase, heat shock proteins, and others; more are currently being described [3, 42 ].”
The Chemistry of Reactive Oxygen Species (ROS) Revisited: Outlining Their Role in Biological Macromolecules (DNA, Lipids and Proteins) and Induced Pathologies (2021, background): “Oxidation of DNA bases by OH- can produce several harmful by-products, and oxidation of ribose can induce strand breaks in bacterial DNA [48].”
Iron‐sulphur clusters and the problem with oxygen (2006, background): “H 2 O2 stress is sensed by the OxyR or PerR systems, which direct activation of about two dozen genes (Zheng et al., 2001; Helmann et al., 2003).”
Oxidative stress: molecular perception and transduction of signals triggering antioxidant gene defenses. (2005, methodology): “Subsequent hierarchical clustering methods allow for the allocation of genes, coregulated temporally or in response to a given signal, into specific expression groups or regulons (48, 53).”
Unravelling the biology of macrophage infection by gene expression profiling of intracellular Salmonella enterica (2002, positive): “To determine whether Salmonella showed an oxidative stress response during macrophage infection, we compared the intracellular transcription profile of Salmonella with the whole-genome expression profile obtained from Escherichia coli treated with hydrogen peroxide in vitro (Zheng et al., 2001).”
Signaling Functions of Reactive Oxygen Species (2010, background): “OxyR is a nuclear factor that in bacteria stimulates, through interaction with RNA polymerase, transcription of genes enhancing resistance to oxidants (62).”