The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

By Joachim Kilian, Dion Whitehead, J. Horák, Dierk Wanke, Stefan Weinl, Oliver Batistič, C. D’Angelo, E. Bornberg-Bauer, J. Kudla, K. Harter. The Plant Journal, 2007

1,436 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/69c795d459b0acc7ee7788fe333d7e017e8d8a97

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

In Plant Science

Citations in the corpus

The role of WRKY transcription factors in plant abiotic stresses. (2012, background): “In Arabidopsis, three WRKY genes were strongly induced by UV-B light treatment [45].”
Deep machine learning provides state-of-the-art performance in image-based plant phenotyping (2016, neutral): “…offered by deep learning will lead to an improvement in the understanding of biological function akin to other high-throughput improvements in biology, such as expression arrays [24] and next-generation sequencing [25], and anticipate numerous paradigm-shifting breakthroughs over the coming years.”
Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell. (2009, methodology): “org/tools/aracyc) was checked in arabidopsis seedlings using the expression profiles available (generated with the Affymetrix ATH1 chip; Kilian et al., 2007).”
Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway1 (2010, background): “A hierarchical cluster analysis of the transcriptome data of Kilian et al. (2007) clearly reveals these features (Fig.”
Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment (2013, background): “…of transcripts that are either up- or down-regulated under stress conditions such as heat shock, cold acclimation, osmotic stress, or salt exposure (Kilian et al. 2007); they have been especially valuable for identifying complex regulatory networks from differentially expressed gene sets (Zou et…”
Gene Expression Profiling of Plants under Salt Stress (2011, methodology): “…provides oligomer microarrays for various plant species and it has been used to study the transcriptome changes in different plant species such as Arabidopsis (El Ouakfaoui and Miki, 2005; Kilian et al., 2007) and rice (Walia et al., 2005; Ray et al., 2007) under salt and other abiotic stresses.”
Salicylic Acid Biosynthesis and Metabolism (2011, background): “…and exogenous SA treatment (Ogawa et al, 2005; Nobuta et al., 2007; Harrower and Wildermuth, 2011; Okrent et al., 2011; AtGenExpress: Abiotic and Biotic Stress Experiments (http://www.arabidopsis.org/portals/expression/microarray/ATGenExpress.jsp; Kilian et al., 2007; Postel et al. 2010)).”
The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors (2008, neutral): “Enriched GO terms and promoter motifs in genes responsive to ‘shock’ drought treatment (from Kilian et al., 2007).”
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. (2008, methodology): “This is consistent with the observations by Kilian et al. (2007), because the drought-induced transcript response was small compared to other stress-induced responses.”
Roles for Arabidopsis CAMTA Transcription Factors in Cold-Regulated Gene Expression and Freezing Tolerance[W][OA] (2009, background): “Analysis of publicly available microarray data (Vogel et al., 2005; Kilian et al., 2007) indicated that the expression pattern of CAMTA3 in response to low temperaturewasmost similar to that ofCAMTA1 (Pearson correlation of 0.56).”
ABA-mediated transcriptional regulation in response to osmotic stress in plants (2011, background): “Expanding transcriptome data sets have uncovered a global picture of ABA-regulated genes in Arabidopsis plants (Cutler et al. 2010; Fujita et al. 2009b; Goda et al. 2008; Kilian et al. 2007; Nemhauser et al. 2006; Seki et al. 2002; Shinozaki et al. 2003; Urano et al. 2009).”