Ari Löytynoja
Molecular Biology · 2007–2014
A researcher in the Science corpus: 5 papers; trusts 13 researchers and is trusted by 38 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 93 citations into it; #1,069 of 17,773 by trust here, #1,958 by citations
- Genetics — 25 citations into it; #634 of 6,854 by trust here, #2,773 by citations
- Plant Science — 23 citations into it; #368 of 8,232 by trust here, #4,310 by citations
- Paleontology — 8 citations into it; #248 of 1,427 by trust here, #1,012 by citations
- Artificial Intelligence — 6 citations into it
- Cancer Research — 5 citations into it
Whom Ari Löytynoja trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ziheng Yang
- Christophe Dessimoz
- Alexandros Stamatakis
- Nick Goldman
- Simon A. Berger
- Sean R. Eddy
- Simon Whelan
- Manuel Gil
- Masami Hasegawa
- W. Fletcher
Who trusts Ari Löytynoja overall
- Kazutaka Katoh
- Ziheng Yang
- Daron M. Standley
- Simon A. Berger
- Travis N. Mavrich
- Hitomi Hasegawa
- Andrew J. Page
- Haim Ashkenazy
- Chuan-Yu Xiang
- Vincent Ranwez
Papers from Ari Löytynoja's perspective
Ordered by how strongly the researchers Ari Löytynoja trusts endorse each paper. Same corpus, a different order for every researcher.
- Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis (Science)
- Initial sequencing and comparative analysis of the mouse genome (Nature)
- MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
- Phylogenetic assessment of alignments reveals neglected tree signal in gaps
- RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
- A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach.
- Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood (Systematic Biology)
- INDELible: A Flexible Simulator of Biological Sequence Evolution
- Accelerated Profile HMM Searches
- Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome (Nature Genetics)
Their papers
- Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis (2008) — 812 citations
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) — 5,374 citations
- Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm (2012) — 140 citations
- webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser (2010) — 448 citations
- Phylogeny-aware alignment with PRANK. (2014) — 657 citations