Daniel R. Mende
Molecular Biology · 2010–2022
A researcher in the Science corpus: 13 papers; trusts 8 researchers and is trusted by 7 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 284 citations into it; #6,462 of 17,773 by trust here, #365 by citations
Whom Daniel R. Mende trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ramon Rosselló-Mora
- Jaime Huerta-Cepas
- Molly K. Gibson
- Ivica Letunic
- Peer Bork
- Minoru Kanehisa
- Brandi L. Cantarel
- Yanbin Yin
- R. Amann
- Shinichi Sunagawa
Who trusts Daniel R. Mende overall
- Jaime Huerta-Cepas
- Damian Szklarczyk
- Mincheol Kim
- Kristoffer Forslund
- Neha J. Varghese
- J. Espín
- Ivica Letunic
- Sean Powell
- Shinichi Sunagawa
- Luis Pedro Coelho
Papers from Daniel R. Mende's perspective
Ordered by how strongly the researchers Daniel R. Mende trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- The Pfam protein families database
- Accelerated Profile HMM Searches
- The COG database: an updated version includes eukaryotes
- A genomic perspective on protein families.
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) (Nucleic Acids Res.)
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- Data, information, knowledge and principle: back to metabolism in KEGG (Nucleic Acids Res.)
- KEGG: Kyoto Encyclopedia of Genes and Genomes (Nucleic Acids Res.)
- Expanded microbial genome coverage and improved protein family annotation in the COG database
Their papers
- A human gut microbial gene catalog established by metagenomic sequencing (2010) — 11,043 citations
- Enterotypes of the human gut microbiome (2011) — 4,302 citations
- Genomic variation landscape of the human gut microbiome (2012) — 855 citations
- Accurate and universal delineation of prokaryotic species (2013) — 329 citations
- Structure and function of the global ocean microbiome (2015) — 2,530 citations
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences (2015) — 1,948 citations
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses (2018) — 4,095 citations
- proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes (2016) — 124 citations
- Enterotypes of the human gut microbiome (2011) — 768 citations
- An integrated catalog of reference genes in the human gut microbiome (2014) — 1,947 citations
- Metabolic dependencies drive species co-occurrence in diverse microbial communities (2015) — 809 citations
- Enterotypes of the human gut mycobiome (2022) — 2,003 citations
- Critical Assessment of Metagenome Interpretation: the second round of challenges (2021) — 314 citations