Metabolic dependencies drive species co-occurrence in diverse microbial communities

By Aleksej Zelezniak, Sergej Andrejev, Olga Ponomarova, Daniel R. Mende, Peer Bork, Kiran Raosaheb Patil. Proceedings of the National Academy of Sciences of the United States of America, 2015

809 citations recorded by the source corpus.

Subfields: Ecology, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/3efba694fb926659dacc51aad100bd108e45a9af

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Ecology

In Molecular Biology

Citations in the corpus

Co-occurrence is not evidence of ecological interactions. (2020, background): “…associations in co-occurrence data as a potential sign of biotic interactions towards the reconstruction of entire ecological networks derived from large presence absence data sets (Faust & Raes, 2012; Wisz et al., 2013; Berry & Widder, 2014; Zelezniak et al., 2015; Mandakovic et al., 2018).”
Fast automated reconstruction of genome-scale metabolic models for microbial species and communities (2018, methodology): “The model can be readily used for flux balance analysis (just like a single-species model) to explore the solution space of the community phenotype, and also for the application of community-specific simulation methods (10,11).”
The Classification and Evolution of Bacterial Cross-Feeding (2019, background): “Recent genome-scale metabolic modelling of 800 bacterial communities, drawn from a variety of natural environments including the gut, analysed the metabolic relationships within each (Zelezniak et al., 2015).”
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles (2019, background): “A survey of metabolic exchange in hundreds of communities showed metabolic complementarity is common in natural communities (Zelezniak et al. 2015).”
Microbial interactions within the plant holobiont (2018, neutral): “among microbes, including soil, water, and the human gut bacteria [100].”
Microbial diversity and ecological networks as indicators of environmental quality (2017, background): “pathways (Levy and Borenstein 2013; Zelezniak et al. 2015), or the effect of engineering species (Jones et al.”