Yingrui Li

Molecular Biology · 2008–2016

A researcher in the Science corpus: 36 papers; trusts 1 researcher and is trusted by 22 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 473 citations into it; #2,476 of 17,773 by trust here, #73 by citations

Whom Yingrui Li trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. W. James Kent

Who trusts Yingrui Li overall

1. Mark J. P. Chaisson
2. Heng Li
3. Ben Langmead
4. Alicia Oshlack
5. Nils Homer
6. S. Deschamps
7. Jay Shendure
8. Yuanxin Xi
9. Michael C. Schatz
10. Jun Zhang

Papers from Yingrui Li's perspective

Ordered by how strongly the researchers Yingrui Li trusts endorse each paper. Same corpus, a different order for every researcher.

1. Basic local alignment search tool.
2. Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)
3. Aligning multiple genomic sequences with the threaded blockset aligner. (Genome Research)
4. An Eulerian path approach to DNA fragment assembly (Proceedings of the National Academy of Sciences of the United States of America)
5. Exome sequencing as a tool for Mendelian disease gene discovery
6. Whole-genome re-sequencing. (Current Opinion in Genetics and Development)
7. The Human Gene Mutation Database: 2008 update
8. The Diploid Genome Sequence of an Individual Human (PLoS Biology)
9. Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry (Nature)
10. Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Their papers

• A human gut microbial gene catalog established by metagenomic sequencing (2010) — 11,043 citations
• De novo assembly of human genomes with massively parallel short read sequencing. (2010) — 2,937 citations
• SOAP: short oligonucleotide alignment program (2008) — 3,419 citations
• The diploid genome sequence of an Asian individual (2008) — 987 citations
• A global reference for human genetic variation (2015) — 16,925 citations
• SOAP2: an improved ultrafast tool for short read alignment (2009) — 3,707 citations
• The sequence and de novo assembly of the giant panda genome (2009) — 1,210 citations
• A metagenome-wide association study of gut microbiota in type 2 diabetes (2012) — 6,195 citations
• A systematic survey of loss-of-function variants in human protein-coding genes (2012) — 1,227 citations
• Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species (2013) — 725 citations
• Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) — 544 citations
• SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler (2012) — 4,725 citations
• The genome of the cucumber, Cucumis sativus L. (2009) — 1,423 citations
• SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads (2013) — 863 citations
• Ancient human genome sequence of an extinct Palaeo-Eskimo (2010) — 818 citations
• The UK10K project identifies rare variants in health and disease (2015) — 1,063 citations
• The Kinome of Pacific Oyster Crassostrea gigas, Its Expression during Development and in Response to Environmental Factors (2016) — 1,943 citations
• Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder (2011) — 717 citations
• SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data (2012) — 390 citations
• The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment (2015) — 1,542 citations