Whole-genome re-sequencing.

By D. Bentley. Current Opinion in Genetics and Development, 2006

840 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/eed1cf6dcea38f2f56f4406b26e81230e32a07d5

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

In Molecular Biology

Citations in the corpus

The SAAP pipeline and database: tools to analyze the impact and predict the pathogenicity of mutations (2013, background): “resulting from the application of SNP chips [1] and next-generation sequencing [2] has led to a huge demand to analyze and predict the effects of mutations.”
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing (2007, methodology): “The Illumina 1G system (1G) provides a 1–2 orders of magnitude increase in the amount of sequence that can be cost-effectively generate”
Metagenomic Analyses: Past and Future Trends (2010, background): “The introduction of next-generation sequencing platforms, such as the Roche 454 sequencer (73), the SOLiD system of Applied Biosystems (9), and the Genome Analyzer of Illumina, had a big impact on metagenomic research (9).”
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species (2013, background): “Read lengths that started out at 25 bp on the Solexa/Illumina platform [1] have increased by an order of magnitude in just over half a decade.”
Next-generation DNA sequencing (2008, background): “14), and other groups have quickly followed 17,18 .”
BFAST: An Alignment Tool for Large Scale Genome Resequencing (2009, background): “for large-scale sequencing projects. Technologies like Illumina's Genome Analyzer”
Velvet: algorithms for de novo short read assembly using de Bruijn graphs. (2008, methodology): “Recently, new sequencing technologies have emerged (Metzker 2005), for example, pyrosequencing (454 Sequencing) (Margulies et al. 2005) and sequencing by synthesis (Solexa) (Bentley 2006), both commercially available.”
ChIP-Seq: advantages and challenges of a maturing technology (2009, background): “Owing to the rapid technological developments in next-generation sequencing (NGS), the arsenal of genomic assays available to the biologist has been transforme”
Aggressive assembly of pyrosequencing reads with mates (2008, background): “It exploited the mate constraints provided by paired-end reads from either platform to build larger contigs and scaffolds, which were validated by comparison to a finished reference sequence.”
MetaSim—A Sequencing Simulator for Genomics and Metagenomics (2008, neutral): “Sanger [28,29], Roche’s 454 [7] and Illumina (former Solexa) [30]).”
Mapping short DNA sequencing reads and calling variants using mapping quality scores. (2008, methodology): “The advent of novel sequencing technologies such as 454 Life Sciences (Roche) (Margulies et al. 2005), Illumina (formerly known as Solexa sequencing), and Applied Biosystems SOLiD opens opportunities to a variety of biological applications, including resequencing ( Bentley, 2006; Hillier et al. 200”
Hybrid error correction and de novo assembly of single-molecule sequencing reads (2012, neutral): “Second-generation sequencing technologies, starting with 454 pyro-sequencing 1 in 2004, Illumina sequencing-by-synthesis 2 in 2007 and others, have revolutionized DNA sequencing by reducing cost and increasing throughput exponentially over first-generation Sanger 3 sequencing.”