The genome of the cucumber, Cucumis sativus L.

By Sanwen Huang, Ruiqiang Li, Zhonghua Zhang, Li Li, X. Gu, Wei Fan, W. J. Lucas, Xiaowu Wang, B. Xie, Peixiang Ni and 85 more. Nature Genetics, 2009

1,423 citations recorded by the source corpus.

Subfields: Genetics, Horticulture, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/82c099156cb96a83edebfa4a0c9c80da025ff32b

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Citations in the corpus

Limitations of next-generation genome sequence assembly (2010, background): “Recently, researchers from the Beijing Genome Institute sequenced the cucumber genome using both capillary sequencing and Illumina technolog”
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers (2011, neutral): “When compared to other sequenced plant genomes, such as those from cucumber (26,682”
The genome of melon (Cucumis melo L.) (2012, background): “Similar results were obtained when the annotation pipeline was applied to the 9930 cucumber genome (19).”
The genome of the pear (Pyrus bretschneideri Rehd.) (2013, methodology): “Through MUSCLE alignment of gene pairs in collinearity blocks (Edgar 2004), 4dTv (transversion of fourfold degenerate site) values of each block were calculated using the sum of transversion of fourfold degenerate sites divided by the sum of fourfold degenerate sites (Huang et al. 2009).”
De novo assembly of human genomes with massively parallel short read sequencing. (2010, methodology): “Currently, using the Illumina GA sequencing technology and our short read as-sembler presented here, we have sequenced and assembled nearly a dozen plant and animal genomes, including the panda (Li et al. 2009d), duck, potato, cucumber (Huang et al. 2009), watermelon, and others.”
A linkage map of cultivated cucumber (Cucumis sativus L.) with 248 microsatellite marker loci and seven genes for horticulturally important traits (2011, methodology): “SSR markers analysis In our previous studies, many SSR markers were developed from whole genome sequence of 9930 (Ren et al. 2009; Huang et al. 2009).”
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach (2013, methodology): “The parasites’ nuclear genome size was estimated based on the k-mer frequency distributions of the entire data sets, respectively, as demonstrated in previous studies (44,45).”
Triterpene biosynthesis in plants. (2014, background): “This cluster may be required for cucurbitacin synthesis (50).”
An efficient cucumber (Cucumis sativus L.) protoplast isolation and transient expression system (2013, background): “Huang et al. / Scientia Horticulturae 150 (2013) 206–212”