Jonathan A. Eisen
Molecular Biology · 1999–2017
A researcher in the Science corpus: 30 papers; trusts 34 researchers and is trusted by 21 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 316 citations into it; #2,246 of 17,773 by trust here, #429 by citations
- Ecology — 141 citations into it; #1,102 of 10,717 by trust here, #147 by citations
- Plant Science — 83 citations into it
- Genetics — 53 citations into it; #990 of 6,854 by trust here, #2,654 by citations
- Computational Biology & Bioinformatics — 27 citations into it
- Paleontology — 12 citations into it
- Nature and Landscape Conservation — 6 citations into it
- Global and Planetary Change — 5 citations into it
Whom Jonathan A. Eisen trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Sean R. Eddy
- Alexandros Stamatakis
- Catherine A. Lozupone
- Stéphane Guindon
- Julie Dawn Thompson
- Ivica Letunic
- James R. Cole
- Micah Hamady
- F. Primeau
- Sunil Rao
Who trusts Jonathan A. Eisen overall
- David R. Kelley
- Aaron E. Darling
- Alejandra Escobar-Zepeda
- Steven W. Kembel
- M. E T H O D O L O G Y A R T I C
- Nicola Segata
- Steven L. Salzberg
- Omri M. Finkel
- Guillaume Jospin
- Ximei Zhang
Papers from Jonathan A. Eisen's perspective
Ordered by how strongly the researchers Jonathan A. Eisen trusts endorse each paper. Same corpus, a different order for every researcher.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- ARB: a software environment for sequence data. (Nucleic Acids Research)
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- MUSCLE: multiple sequence alignment with high accuracy and high throughput.
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness (Applied and Environmental Microbiology)
- A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. (Systematic Biology)
- Community structure and metabolism through reconstruction of microbial genomes from the environment (Nature)
- Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy (Applied and Environmental Microbiology)
- rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria (Applied and Environmental Microbiology)
Their papers
- The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families (2007) — 858 citations
- TIGRFAMs: a protein family resource for the functional identification of proteins (2001) — 490 citations
- Environmental Genome Shotgun Sequencing of the Sargasso Sea (2004) — 4,349 citations
- A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea (2009) — 1,012 citations
- Insights into the phylogeny and coding potential of microbial dark matter (2013) — 2,164 citations
- A simple, fast, and accurate method of phylogenomic inference (2008) — 513 citations
- Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance (2012) — 497 citations
- 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life (2017) — 243 citations
- PhyloSift: phylogenetic analysis of genomes and metagenomes (2014) — 575 citations
- Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae (2001) — 1,439 citations
- The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria (2003) — 840 citations
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2017) — 2,110 citations
- An Integrated Pipeline for de Novo Assembly of Microbial Genomes (2012) — 437 citations
- Genome sequence of the human malaria parasite Plasmodium falciparum (2002) — 4,455 citations
- Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote (2006) — 764 citations
- Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis (2003) — 884 citations
- Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing (2012) — 789 citations
- Drivers of bacterial β-diversity depend on spatial scale (2011) — 746 citations
- Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440. (2002) — 1,384 citations
- Research priorities for harnessing plant microbiomes in sustainable agriculture (2017) — 701 citations