Aaron E. Darling
Molecular Biology · 2003–2017
A researcher in the Science corpus: 13 papers; trusts 30 researchers and is trusted by 16 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 186 citations into it; #3,512 of 17,773 by trust here, #1,389 by citations
- Ecology — 61 citations into it; #8,514 of 10,717 by trust here, #1,460 by citations
- Genetics — 55 citations into it
- Plant Science — 35 citations into it; #1,445 of 8,232 by trust here, #1,787 by citations
- Food Science — 15 citations into it; #401 of 1,700 by trust here, #464 by citations
- Endocrinology — 12 citations into it
- Computational Biology & Bioinformatics — 9 citations into it
Whom Aaron E. Darling trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- W. James Kent
- Stephen F. Altschul
- Robert C. Edgar
- Terence P. Speed
- Sean R. Eddy
- Xavier Didelot
- William D. Gropp
- Serafim Batzoglou
- Julie Dawn Thompson
- Desmond G. Higgins
Who trusts Aaron E. Darling overall
- Todd J. Treangen
- Florian P. Breitwieser
- Xavier Didelot
- Andrzej Zielezinski
- Mark J. P. Chaisson
- Lior S. Pachter
- Cédric Chauve
- Benjamin Buchfink
- Keith A. Jolley
- Richa Bharti
Papers from Aaron E. Darling's perspective
Ordered by how strongly the researchers Aaron E. Darling trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Community structure and metabolism through reconstruction of microbial genomes from the environment (Nature)
- Aligning multiple genomic sequences with the threaded blockset aligner. (Genome Research)
- T-Coffee: A novel method for fast and accurate multiple sequence alignment.
- Identification of common molecular subsequences.
- Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. (Genome Research)
- The Pfam protein families database
Their papers
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space (2012) — 25,767 citations
- BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics (2011) — 656 citations
- Insights into the phylogeny and coding potential of microbial dark matter (2013) — 2,164 citations
- Assemblathon 1: a competitive assessment of de novo short read assembly methods. (2011) — 544 citations
- PhyloSift: phylogenetic analysis of genomes and metagenomes (2014) — 575 citations
- Mauve: multiple alignment of conserved genomic sequence with rearrangements. (2004) — 4,641 citations
- progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement (2010) — 3,755 citations
- An Integrated Pipeline for de Novo Assembly of Microbial Genomes (2012) — 437 citations
- Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software (2017) — 675 citations
- A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data (2014) — 1,070 citations
- The Amphimedon queenslandica genome and the evolution of animal complexity (2010) — 1,023 citations
- Reordering contigs of draft genomes using the Mauve Aligner (2009) — 548 citations
- The design, implementation, and evaluation of mpiBLAST (2003) — 463 citations