Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.

By K. Nelson, Christian Weinel, Ian T. Paulsen, R. Dodson, H. Hilbert, V. M. Santos, Derrick E. Fouts, S. Gill, M. Pop, Mark A. Holmes and 33 more. Environmental Microbiology, 2002

1,384 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/55ebabf3eaf76c76b40766cae78213fc946c6430

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Citations in the corpus

Attachment to and biofilm formation on abiotic surfaces by Acinetobacter baumannii: involvement of a novel chaperone-usher pili assembly system. (2003, background): “…analysis also showed that the systems most related to that of A. baumannii 19606 are found in the human pathogens P. aeruginosa (Stover et al., 2000) and Y. pestis, and the environmental bacterium P. putida (Nelson et al., 2002), all of which have been annotated as hypothetical genes and proteins.”
Pseudomonas genomes: diverse and adaptable. (2011, background): “Genome sequences of strains of Pseudomonas syringae (Buell et al., 2003), Pseudomonas putida (Nelson et al., 2002), Pseudomonas fluorescens (Paulsen et al., 2005), Pseudomonas entomophila (Vodovar et al., 2006), Pseudomonas mendocina (unpublished data) and Pseudomonas stutzeri (Yan et al., 2008)…”
CONSEJO SUPERIOR DE INVESTIGACIONES CIENTÍFICAS (2009, background): “(Nelson et al., 2002), what makes difficult assign it a specific kinase.”
PHAST: A Fast Phage Search Tool (2011, background): “However, prophage regions do not always exhibit atypical nucleotide content (8).”
Prophages and bacterial genomics: what have we learned so far? (2003, background): “A dramatic example of this may be indicated by genes homologous to the RNA polymerase gene of virulent E. coli phage T7 in the X. axonopodis 903 genome (da Silva et al., 2002) and in the Pseudomonas putida KT2440 (Nelson et al., 2002).”
Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria (2005, neutral): “…7 (Hayashi et al. 2001), 8 6 (Perna et al. 2001), 9 (Munson et al 2003, unpublished), 10 (Fleischmann et al. 1995), 11 7 (Stover et al. 2000), 12 (Nelson et al. 2002), 13 (Buell et al. 2003), 14 (May et al. 2001), 15 8 (Jin et al. 2002), 16 (Wei et al. 2003), 17 (Heidelberg et al. 2002), 18…”
Lignin valorization through integrated biological funneling and chemical catalysis (2014, background): “putida (21, 27), we predict that most of the aromatic molecules present in APL (SI Appendix, Table S1) will be catabolized via the β-ketoadipate pathway, as illustrated in SI Appendix, Fig.”
Phage_Finder: Automated identification and classification of prophage regions in complete bacterial genome sequences (2006, methodology): “putida prophage had best BLAST matches to T7-like phages (12).”