Colin N. Dewey

Molecular Biology · 2002–2013

A researcher in the Science corpus: 13 papers; trusts 44 researchers and is trusted by 54 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 341 citations into it; #781 of 17,773 by trust here, #315 by citations
• Genetics — 76 citations into it; #2,963 of 6,854 by trust here, #835 by citations
• Cancer Research — 37 citations into it
• Artificial Intelligence — 14 citations into it
• Paleontology — 11 citations into it
• Ecology — 6 citations into it

Whom Colin N. Dewey trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Maqc Consortium
2. Adam Roberts
3. Zhong Wang
4. Kasper D. Hansen
5. Cole Trapnell
6. Mark D. Robinson
7. Hui Jiang
8. Ali Mortazavi
9. John C. Marioni
10. Ben Langmead

Who trusts Colin N. Dewey overall

1. Brian J. Haas
2. N. Davidson
3. Rhonda L. Bacher
4. Rob Patro
5. Claudia R. Solís-Lemus
6. Jens Keilwagen
7. Geng Chen
8. Yang Liao
9. Oliver Stegle
10. Shanrong Zhao

Papers from Colin N. Dewey's perspective

Ordered by how strongly the researchers Colin N. Dewey trusts endorse each paper. Same corpus, a different order for every researcher.

1. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
2. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (Genome Research)
3. RNA-Seq: a revolutionary tool for transcriptomics (Nature reviews genetics)
4. NCBI Reference Sequences: current status, policy and new initiatives (Nucleic Acids Res.)
5. The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing (Science)
6. The Sequence Alignment/Map format and SAMtools (Bioinform.)
7. The human genome browser at UCSC.
8. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
9. Control of developmental regulators by Polycomb in human embryonic stem cells. (Cell)
10. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome (Nature Genetics)

Their papers

• RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome (2011) — 19,984 citations
• Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) — 5,374 citations
• Genome sequence of the Brown Norway rat yields insights into mammalian evolution (2004) — 2,140 citations
• RNA-Seq gene expression estimation with read mapping uncertainty (2009) — 1,147 citations
• Fast Statistical Alignment (2009) — 361 citations
• The ENCODE (ENCyclopedia Of DNA Elements) Project (2004) — 2,411 citations
• Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures (2007) — 657 citations
• Initial sequencing and comparative analysis of the mouse genome. (2002) — 4,291 citations
• Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution (2004) — 2,677 citations
• De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity (2013) — 7,396 citations
• Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans (2007) — 671 citations
• BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis (2010) — 426 citations
• De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity (2013) — 348 citations