NASCArrays: a repository for microarray data generated by NASC's transcriptomics service

By David J. Craigon, Nick James, J. Okyere, Janet Higgins, J. Jotham, S. May. Nucleic Acids Res., 2004

409 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/a5ef5d7151428a5856d79330490f324fefa1cfcc

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Citations in the corpus

Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses1 (2005, background): “…shoot of the pho1 compared to wild-type plants (Hammond et al., 2004, downloaded from Nottingham Arabidopsis Stock Centre (NASC) arrays; see also Craigon et al., 2004) on a response map that collects sets of genes that are induced or repressed by depletion and subsequent readdition of carbon,…”
Transcriptome analysis of haploid male gametophyte development in Arabidopsis (2004, methodology): “Data analysis Sporophytic data from public baseline GeneChip experiments used for comparison with the pollen transcriptome were downloaded from the NASC website [41,64].”
An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets (2007, background): “With the prevalence of large-scale data sets as a resource for biological research, tools for collecting and examining microarray and other high-throughput results are becoming increasingly significant. Currently, several databases of Arabidopsis gene expression data are accessible, including NASCAr”
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. (2005, background): “Among these, NASCArrays (Craigon et al. , 2004), GEO (Edgar et al. , 2002), SMD (Sher-lock et al. , 2001) and ArrayExpress (Rocca-Serra et al. , 2003) are some of the more prominent ones.”
RNA N6-methyladenosine methylation in post-transcriptional gene expression regulation (2015, background): “Intriguingly, MTA tends to be expressed in higher levels in dividing tissues, such as developing seeds, shoot meristems, and emerging lateral roots (Craigon et al. 2004; Zhong et al. 2008).”
Approaches for extracting practical information from gene co-expression networks in plant biology. (2007, background): “…such as AtGenExpress (Mirror site in Japan, http://pfg.psc. riken.jp/AtGenExpress/links.html), NASCArray (http:// affymetrix.arabidopsis.info/) (Craigon et al. 2004), Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo/) (Edgar et al. 2002) and ArrayExpress (http://www.ebi.…”
Transcriptomic Footprints Disclose Specificity of Reactive Oxygen Species Signaling in Arabidopsis1[W] (2006, background): “…Arabidopsis Functional Genomics Network, http://www.uni-frankfurt.de/fb15/botanik/mcb/AFGN/AFGNHome.html) and from the European Arabidopsis Stock Center international transcriptomics service (NASCArrays; Craigon et al., 2004; http://affymetrix.arabidopsis. info/narrays/experimentbrowse.pl; ref. no.”
GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox1[w] (2004, background): “Thousands of arrays have since been processed, of which a signiﬁcant number are publicly available through services and repositories such as Nottingham Arabidopsis Stock Centre Transcrip-tomics Service (NASCArrays; Craigon et al., 2004), ArrayExpress at the European Bioinformatics Institute (EBI; Br”
Metabolomics for functional genomics, systems biology, and biotechnology. (2010, methodology): “Transcriptome data generated by a number of laboratories are unified in large public datasets, such as AtGenExpress (66, 172) and NASCArrays (33), containing data from >1000 microarrays.”
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis (2006, background): “For the model plant Arabidopsis thaliana, The Arabidopsis Information Resource (TAIR) (4) and the Nottingham Arabidopsis Stock Centre Arrays (NASCArrays) (5) are species-specific repositories for microarray data.”