Approaches for extracting practical information from gene co-expression networks in plant biology.

By Koh Aoki, Yoshiyuki Ogata, Daisuke Shibata. Plant and Cell Physiology, 2007

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ATTED-II provides coexpressed gene networks for Arabidopsis (2008, background): “Indeed, coexpression data have been applied to a wide variety of experimental approaches, such as gene targeting, regulatory investigations and/or identification of potential partners in protein–protein interactions (PPIs) (2,3).”
Genome-wide identification and co-expression network analysis of the OsNF-Y gene family in rice (2017, background): “75 [34], 1364 genes whose expression patterns closely correlated with 22 OsNF-Y genes were identified.”
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. (2008, methodology): “Co-expression analysis using large-scale expression proﬁle data is becoming an essential tool in plant biology (see Aoki et al. , 2007; Saito et al. , 2008).”