GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox1[w]

By Philip Zimmermann, Matthias Hirsch-Hoffmann, L. Hennig, Wilhelm Gruissem. Plant Physiology, 2004

2,581 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/2c0aaeb420e1cd2d767a1797b2ded62e0d2ee426

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Citations in the corpus

LEA (Late Embryogenesis Abundant) proteins and their encoding genes in Arabidopsis thaliana (2008, methodology): “To further test for diversification in expression patterns on a broader basis [105,107,109,110], we have used the "gene correlator" function on the Genevestigator [ 111 ] website, which compares expression patterns from publicly available expression profiling data (Table 6 and 7). This analysis show”
Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. (2006, background): “RD26 expression is induced by JA, hydrogen peroxide (H2O2) and pathogen infections, as well as by drought, high salinity and ABA treatment [21,22].”
Developmental and hormonal control of leaf senescence (2007, neutral): “Analysis was done by GENEVESTIGATOR (Zimmermann et al., 2004).”
The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. (2007, neutral): “These resources include AtGenExpress (Schmid et al. 2005; http://www.weigelworld.org/resources/micro array/AtGenExpress/), ArrayExpress (Brazma et al. 2003; http://www.ebi.ac.uk/arrayexpress/), Botany Array Resource (BAR; Toufighi et al. 2005; http://www.bar. utoronto.ca/), GENEVESTIGATOR (Zimmerman”
Auxin Synthesized by the YUCCA Flavin Monooxygenases Is Essential for Embryogenesis and Leaf Formation in Arabidopsis[W] (2007, background): “Analysis of the public microarray data (Zimmermann et al., 2004) indicates that YUC10, which is closely related to YUC1 and YUC4 in a phylogenetic tree (Cheng et al., 2006), is highly expressed in siliques (Figure 2A).”
A Heat-Inducible Transcription Factor, HsfA2, Is Required for Extension of Acquired Thermotolerance in Arabidopsis1[W][OA] (2006, result): “Our results are consistent with the microarray data generated by von Koskull-Doring’s group for heat-stress response of Arabidopsis (ecotype Col-0, 16-d-old seedlings) at 37 C for 1 h, which was examined using the Genevestigator tool (Zimmermann et al., 2004).”
Reactive oxygen species homeostasis and signalling during drought and salinity stresses. (2010, methodology): “…transcripts encoding transcription factors and other signalling-related proteins up-regulated in apx1 plants during photo-oxidative stress, as well as in wild-type plants following treatment with H2O2 (Davletova et al. 2005a,b), using Genevestigator Metaanalysis tool (Zimmermann et al. 2004; Fig.”
A Downstream Mediator in the Growth Repression Limb of the Jasmonate Pathway[W][OA] (2007, background): “Information on the expression of 12 of the 14 genes listed in Table 2 was available in Genevestigator (Zimmermann et al., 2004) and is displayed in Supplemental Figure 2 online.”
Genevestigator V3: A Reference Expression Database for the Meta-Analysis of Transcriptomes (2008, methodology): “In [5, 6], we presented a novel approach to assemble public expression data for mouse and Arabidopsis into context-related profiles (metaprofiles) and provided easy online access to this database.”
Genome-Wide Identification and Testing of Superior Reference Genes for Transcript Normalization in Arabidopsis1[w] (2005, background): “Gene expression databases for Arabidopsis and other organisms are important resources to investigate the expression pattern of a given gene or gene families, to identify genes that respond to specific stimuli, and to search for coexpressed genes (http://www.ncbi. nlm.nih.gov/geo/; http://www.ebi.ac.”
Cold stress regulation of gene expression in plants. (2007, background): “miRNAs regulate various developmental processes under non-stress environments [64], it is possible that plants might employ the same miRNAs to regulate growth and developmentundercoldstress aswell.Consistent withthis notion, microarray data from Genevestigator [ 65 ] suggest that many of the miRNA t”