Yuzhen Ye
Molecular Biology · 2003–2012
A researcher in the Science corpus: 10 papers; trusts 14 researchers and is trusted by 41 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 145 citations into it; #838 of 17,773 by trust here, #639 by citations
- Ecology — 47 citations into it; #3,697 of 10,717 by trust here, #9,634 by citations
- Genetics — 25 citations into it; #3,631 of 6,854 by trust here, #2,654 by citations
- Computational Biology & Bioinformatics — 12 citations into it
Whom Yuzhen Ye trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ilya N. Shindyalov
- Liisa Holm
- Alexey G. Murzin
- Pavel A. Pevzner
- Mya Breitbart
- Philip E. Bourne
- Christopher Sander
- Adam Godzik
- Robert A. Edwards
- Steven E. Brenner
Who trusts Yuzhen Ye overall
- Alejandra Escobar-Zepeda
- Nicola Segata
- Peter W. Rose
- Richa Bharti
- Pawel Daniluk
- Javier Tamames
- Joanna I. Sulkowska
- Adam Godzik
- Migun Shakya
- Arturo Vera-Ponce de León
Papers from Yuzhen Ye's perspective
Ordered by how strongly the researchers Yuzhen Ye trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- Community structure and metabolism through reconstruction of microbial genomes from the environment (Nature)
- KEGG: Kyoto Encyclopedia of Genes and Genomes (Nucleic Acids Res.)
- Genomic analysis of uncultured marine viral communities (Proceedings of the National Academy of Sciences of the United States of America)
- SCOP: a structural classification of proteins database for the investigation of sequences and structures.
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Metagenomic Analysis of the Human Distal Gut Microbiome (Science)
- An Eulerian path approach to DNA fragment assembly (Proceedings of the National Academy of Sciences of the United States of America)
- An obesity-associated gut microbiome with increased capacity for energy harvest (Nature)
- The RAST Server: Rapid Annotations using Subsystems Technology (BMC Genomics)
Their papers
- FATCAT: a web server for flexible structure comparison and structure similarity searching (2004) — 354 citations
- The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes (2005) — 2,037 citations
- A framework for human microbiome research (2012) — 2,418 citations
- FragGeneScan: predicting genes in short and error-prone reads (2010) — 793 citations
- Structure, Function and Diversity of the Healthy Human Microbiome (2012) — 10,771 citations
- RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data (2011) — 411 citations
- Flexible structure alignment by chaining aligned fragment pairs allowing twists (2003) — 637 citations
- An ORFome assembly approach to metagenomics sequences analysis. (2008) — 37 citations
- A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes (2009) — 573 citations
- The Ecoresponsive Genome of Daphnia pulex (2011) — 1,240 citations