FATCAT: a web server for flexible structure comparison and structure similarity searching

By Yuzhen Ye, Adam Godzik. 2004

354 citations recorded by the source corpus.

Subfields: Materials Chemistry, Molecular Biology, Spectroscopy

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Jianyi Yang
2. Yang Zhang
3. Zhenling Peng
4. Debora Marks
5. Christopher Sander
6. Burkhard Rost
7. Thomas A. Hopf
8. Lucy J. Colwell

In Molecular Biology

1. Yang Zhang
2. Debora Marks
3. Christopher Sander
4. David T. Jones
5. Jianyi Yang
6. Burkhard Rost
7. Lucy J. Colwell
8. Thomas A. Hopf

In Spectroscopy

1. Jianyi Yang
2. Yang Zhang
3. Christopher Sander
4. Robert P. Sheridan
5. Joanna I. Sulkowska
6. Marek Cieplak
7. Zhenling Peng
8. Debora Marks

Citations in the corpus

• 3D structures of membrane proteins from genomic sequencing (2012, positive): “Predicted 3D structures for transmembrane proteins of unknown structure, for which no family member structure has been solved yet, are compared for structural homology against a representative set of proteins in the Protein Data Bank (PDB) using structural alignments with DALI (Holm and Sander, 1993”
• The Vaccinia Virus DNA Helicase Structure from Combined Single-Particle Cryo-Electron Microscopy and AlphaFold2 Prediction (2022, result): “The FATCAT alignment creates chain breaks for the molecule submitted to the alignment.”
• mTM-align: a server for fast protein structure database search and multiple protein structure alignment (2018, background): “In FATCAT, flexibility of structure was considered in the database search.”
• Mechanical stretching of proteins—a theoretical survey of the Protein Data Bank (2007, methodology): “In order to understand homology-based links between the protein structures listed in table 3, we have performed studies of homology using the FATCAT server [125].”