James A. Cuff
Computational Biology & Bioinformatics · 1998–2011
A researcher in the Science corpus: 12 papers; trusts 5 researchers and is trusted by 56 researchers here, as inferred from the citation graph.
Subfields
- Computational Biology & Bioinformatics — 28 citations into it; #120 of 660 by trust here, #426 by citations
Whom James A. Cuff trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Christopher Sander
- Burkhard Rost
- Martin Fodslette Møller
- Geoffrey J. Barton
- W. Kabsch
- John C. Wootton
- Marketa Zvelebil
- Stephen F. Altschul
- William R. Taylor
- Reinhard Schneider
Who trusts James A. Cuff overall
- Burkhard Rost
- Z. Aydın
- Thomas G. Dietterich
- Daisuke Kihara
- Jan Gorodkin
- David C. Jones
- Christian Cole
- Geoffrey J. Barton
- Sujun Hua
- Zhiyong Wang
Papers from James A. Cuff's perspective
Ordered by how strongly the researchers James A. Cuff trusts endorse each paper. Same corpus, a different order for every researcher.
- Prediction of protein secondary structure at better than 70% accuracy.
- Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships.
- Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features
- Statistics of Local Complexity in Amino Acid Sequences and Sequence Databases
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL
- Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods.
- MicroRNA-Directed Cleavage of HOXB8 mRNA (Science)
- Entrez Gene: gene-centered information at NCBI (Nucleic Acids Res.)
- A mammalian microRNA expression atlas based on small RNA library sequencing. (Cell)
- Identification of hundreds of conserved and nonconserved human microRNAs (Nature Genetics)
Their papers
- A bivalent chromatin structure marks key developmental genes in embryonic stem cells. (2006) — 5,488 citations
- Application of multiple sequence alignment profiles to improve protein secondary structure prediction (2000) — 830 citations
- The Ensembl genome database project (2002) — 1,641 citations
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) — 5,374 citations
- Distinguishing protein-coding and noncoding genes in the human genome (2007) — 652 citations
- Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences (2007) — 750 citations
- Initial sequencing and comparative analysis of the mouse genome. (2002) — 4,291 citations
- A high-resolution map of human evolutionary constraint using 29 mammals (2011) — 867 citations
- Genome sequence, comparative analysis and haplotype structure of the domestic dog (2005) — 2,642 citations
- JPred : a consensus secondary structure prediction server (1999)
- Evaluation and improvement of multiple sequence methods for protein secondary structure prediction (1999)
- JPred: a consensus secondary structure prediction server (1998)