Arian F. A. Smit
Molecular Biology · 2000–2021
A researcher in the Science corpus: 24 papers; trusts 13 researchers and is trusted by 9 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 351 citations into it; #5,086 of 17,773 by trust here, #102 by citations
- Plant Science — 130 citations into it; #6,530 of 8,232 by trust here, #104 by citations
- Computational Biology & Bioinformatics — 27 citations into it
Whom Arian F. A. Smit trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Arian F. A. Smit overall
- Robert S. Harris
- Gabriela G. Loots
- Ivan Ovcharenko
- Lior S. Pachter
- Mario Stanke
- Adam C. Siepel
- Donna Karolchik
- Alexander F. Auch
Papers from Arian F. A. Smit's perspective
Ordered by how strongly the researchers Arian F. A. Smit trusts endorse each paper. Same corpus, a different order for every researcher.
- Automated de novo identification of repeat sequence families in sequenced genomes. (Genome Research)
- Basic local alignment search tool.
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Hidden Markov models for detecting remote protein homologies
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
- Repbase Update, a database of repetitive elements in eukaryotic genomes (Mobile DNA)
- Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor (BMC Bioinformatics)
- Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods.
- MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform.
Their papers
- Initial sequencing and analysis of the human genome (2001) — 24,262 citations
- Human-mouse alignments with BLASTZ. (2003) — 1,354 citations
- Aligning multiple genomic sequences with the threaded blockset aligner. (2004) — 1,595 citations
- Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes (2002) — 1,595 citations
- Genome sequence of the Brown Norway rat yields insights into mammalian evolution (2004) — 2,140 citations
- The UCSC Genome Browser database: 2015 update (2014) — 993 citations
- Initial sequence of the chimpanzee genome and comparison with the human genome (2005) — 2,343 citations
- PipMaker--a web server for aligning two genomic DNA sequences. (2000) — 1,263 citations
- Evolutionary and Biomedical Insights from the Rhesus Macaque Genome (2007) — 1,385 citations
- Dfam: a database of repetitive DNA based on profile hidden Markov models (2012) — 297 citations
- Initial sequencing and comparative analysis of the mouse genome. (2002) — 4,291 citations
- Comparative analyses of multi-species sequences from targeted genomic regions (2003) — 664 citations
- Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution (2004) — 2,677 citations
- Tumour invasion and metastasis initiated by microRNA-10b in breast cancer (2008) — 1,058 citations
- The complete sequence of a human genome (2021) — 2,469 citations
- RepeatModeler2: automated genomic discovery of transposable element families (2019) — 1,040 citations
- The Dfam community resource of transposable element families, sequence models, and genome annotations (2020) — 610 citations
- Analysis of Genetic Inheritance in a Family Quartet by Whole Genome Sequencing (2010) — 666 citations
- Comparative and demographic analysis of orangutan genomes (2011) — 595 citations
- The Dfam database of repetitive DNA families (2015) — 664 citations