Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

By S. Aparício, Jarrod Chapman, E. Stupka, N. Putnam, Jer-Ming Chia, Paramvir S. Dehal, A. Christoffels, Sam Rash, Shawn Hoon, Arian F. A. Smit and 30 more. Science, 2002

1,595 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/8f7e546850c4be68fa610265b3ad0797e0733b79

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Citations in the corpus

Discovering genotypes underlying human phenotypes: past successes for mendelian disease, future approaches for complex disease (2003, result): “In particular, comparison with the sequence of Fugu rubripes”
Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach (2010, methodology): “Takifugu rubripes (pufferfish) [JGI, unpublished data [92]] filtered models v4, JGI”
The relationship between non-protein-coding DNA and eukaryotic complexity. (2007, background): “The increased annotation fidelity of vertebrate genomes reveals a clustering at the high end of the nc/tg spectrum, which includes the compact puffer-fish genomes.((53,69)) We suspect that recently sequenced genomes from lower eukaryotes, which are currently predicted to have high Problems and parad”
Increasing biological complexity is positively correlated with the relative genome-wide expansion of non-protein-coding DNA sequences (2003, neutral): “This still leaves about two thirds of the genome containing highly unique sequences unaccounted for, which seems remarkable especially since there appears to be “rapid deletion of nonfunctional sequences” in this organism [4].”
A Primer on Metagenomics (2010, neutral): “Phrap, Forge, Arachne [45], JAZZ [46], and the Celera Assembler [47] are all assembly programs that were developed for single genome assembly from Sanger sequencing.”
Comparative analyses of multi-species sequences from targeted genomic regions (2003, background): “Comparative analyses of vertebrate sequences can identify codin”