Gene W. Tyson
Molecular Biology · 2004–2025
A researcher in the Science corpus: 15 papers; trusts 11 researchers and is trusted by 11 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 285 citations into it; #4,808 of 17,773 by trust here, #1,094 by citations
- Ecology — 143 citations into it; #3,629 of 10,717 by trust here, #591 by citations
- Genetics — 42 citations into it
- Food Science — 18 citations into it
- Pollution — 7 citations into it
Whom Gene W. Tyson trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
Who trusts Gene W. Tyson overall
- Mihai Pop
- A. Schippers
- C. Castelle
- Xochitl C. Morgan
- Mark V Brown
- Jillian F. Banfield
- Elaine R. Mardis
- Daniel H. Huson
- Brian D. Ondov
- Hideki Noguchi
Papers from Gene W. Tyson's perspective
Ordered by how strongly the researchers Gene W. Tyson trusts endorse each paper. Same corpus, a different order for every researcher.
- Microbial diversity in the deep sea and the underexplored “rare biosphere” (Proceedings of the National Academy of Sciences of the United States of America)
- Identifying biologically relevant differences between metagenomic communities (Bioinform.)
- The Human Microbiome Project (Nature)
- Accurate determination of microbial diversity from 454 pyrosequencing data (Nature Methods)
- The COG database: a tool for genome-scale analysis of protein functions and evolution
- An obesity-associated gut microbiome with increased capacity for energy harvest (Nature)
- Phymm and PhymmBL: Metagenomic Phylogenetic Classification with Interpolated Markov Models (Nature Methods)
- KEGG: Kyoto Encyclopedia of Genes and Genomes (Nucleic Acids Res.)
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Their papers
- Community structure and metabolism through reconstruction of microbial genomes from the environment (2004) — 2,363 citations
- Microbial community gene expression in ocean surface waters (2008) — 815 citations
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes (2013) — 1,227 citations
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life (2017) — 1,634 citations
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes (2015) — 10,973 citations
- Community Proteomics of a Natural Microbial Biofilm (2005) — 788 citations
- A genomic catalog of Earth’s microbiomes (2020) — 743 citations
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea (2017) — 2,110 citations
- Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data (2013) — 327 citations
- Fast, accurate error-correction of amplicon pyrosequences using Acacia (2012) — 337 citations
- Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics (2015) — 692 citations
- CoverM: read alignment statistics for metagenomics (2025) — 394 citations
- CheckM2: a rapid, scalable and accurate tool for assessing microbial genome quality using machine learning (2022) — 1,204 citations
- STAMP: statistical analysis of taxonomic and functional profiles (2014) — 3,743 citations
- Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage (2013) — 1,199 citations