STAMP: statistical analysis of taxonomic and functional profiles

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A practical guide to amplicon and metagenomic analysis of microbiome data (2020, methodology): “Difference comparison is used to identify features (such as species, genes, or pathways) with signi ﬁ cantly different abundances between groups using Welch ’ s t-test, Mann-Whitney U test, Kruskal-Wallis test, or tools such as ALDEx2, edgeR (Robinson et al., 2010), STAMP (Parks et al., 2014), or LE”
Gut bacteria of field-collected larvae of Spodoptera frugiperda undergo selection and are more diverse and active in metabolizing multiple insecticides than laboratory-selected resistant strains (2020, methodology): “Comparative analyses at the taxonomic level were conducted in the software Statistical Analysis of Metagenomic Profiles (STAMP) (Parks et al.”
Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research (2017, background): “3 [45]), which is used to identify particular taxa that significantly differ in abundance between groups, as well as for several visualizations.”
Stunted microbiota and opportunistic pathogen colonisation in caesarean section birth (2019, neutral): “0 48 .”